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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCAACCTGCGCCATCTGTAGGATCCGGAGATACAATATGGGTTGAGGGGCTTGTTCCTGGCATTGACTTTTGCAACCATGgtatgccaatctttgtttcaaaaagactctattatcagtttctccgttccataatgttgatatggttaatgagtatatcccagtgtgatgtgatataatgacctatggttatggcagtatag

Basic information

species Arabidopsis thaliana
transcript AT1G01920.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G01920.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA09G39970.1 (Glycine max), 5'ss of exon 9
GCTCAACCTGCGCCATCTGTAGGATCCGGAGATACAATATGGGTTGAGGGGCTTGTTCCTGGCATTGACTTTTGCAACCATGgtatgccaatctttgtttcaaaaagactctat-tatcagtttctccgttccataatgttgatatggttaatgagtatatcccagtgtgatgtgatataatgacctatggttatggcagtatag
                            |||| ||  | ||||||||||| ||||| ||||||||||||||||| ||||||||||    |||  | | || ||     ||  || | |||  | | |  | |  |  | || || |  | | | | | | |     | || |    | |||  || | |  |             
----------------------------GAGACACTGTTTGGGTTGAGGGTCTTGTCCCTGGCATTGACTTTTGTAACCATGgta----aattgtagctttaacc---cttgatatttcacctcccctctactttccttttcatttcttcattaattgtgttatgat-tgttcccctttaa--acttttttt-------------

upper sequence: AT1G01920.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA18G46250.1 (Glycine max), 5'ss of exon 9
---------------GCTCAACCTGCGCCATCTG---TAGGATCCGGAGATACAATATGGGTTGAGGGGCTTGTTCCTGGCATTGACTTTTGCAACCATGgtatgccaatctttgtttcaaaaagactctat-tatcagtttctccgttccataatgttgatatggttaatgagtatatcccagtgtgatgtgatataatgacctatggttatggcagtatag
                |  ||   | | ||| |     |    | ||||| ||  | |||||||| || ||||| ||||||||||||||||| ||||||||||    |||  ||| || ||     ||  || | ||| || | | || |  |  | || || |  | | ||| | |||     | ||||    | |||  |   |                 
CAATCTGACAATCTGACCAAAGAAGGGACATGTAACCCAATGACAGGAGACACTGTTTGGGTTGAAGGTCTTGTCCCTGGCATTGACTTTTGTAACCATGgta----aattgttgctttaacc---cttgatatttcacttcccctgtactttccttttcatttcttcattgattgtattttgat-tgatcccctttaaaaaaaaaac---------------

upper sequence: AT1G01920.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv04s0043g00790.t01 (Vitis vinifera), 5'ss of exon 8
--------------GCTCAACCTGCG----CCATCTGTAGGATCCGGAGATACAATATGGGTTGAGGGGCTTGTTCCTGGCATTGACTTTTGCAACCATGgtatgccaatctttgtttcaaaaagactctattatcagtttctccgttccataatgttgatatggttaatgagtatatcccagtgtgatgtgatataatgacctatggttatggcagtatag
                |||||    |     | |||  |      | ||| |   | ||||||||||| ||||| ||||||||||| ||||| ||||||||||||  |||    |||  | ||   |    ||||   |  |||  | | |  |   |       | ||  | | |      |   ||| |  | |  | |  | |  || |          
GGGTTTGAAAGCCAAGTCAACAGAGGGACTTCCTCTTCAATGCAAGAAGAAATCCTCTGGGTTGAGGGTCTTGTCCCTGGCATTGATTTTTGTAACCATGgtatggaaat---ggttctataattccaaggttat--ataactctctactagtacact-------tcaaatattgtgcttttgctagattttgttttgtcattttttatttt----------