1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ACAAGAAAAACGAGAACAAGGAAGTTGCAGTGAATGATTTTCTGCCATCTGAGTCTGCGGTTGAAGCTATCCAGTACTCAATgtaagcctctgtttctttatcaagaaccaaactctcttacatcttttttagtttgtaacattaaagcaactctggattctgaattccccattacag
species | Arabidopsis thaliana |
transcript | AT1G01050.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CTGCCATCTGAGTCTGCGGTTGAAGCTATCCAGTACTCAAT GGACCTCTATGCTGAATACATTCTEST: gi|86084748|gb|DR380507.1|DR380507
genomic: CTGCCATCTGAGTCTGCGGTTGAAGCTATCCAGTACTCAATgtaagcctct ... cccattacagGGACCTCTATGCTGAATACATTCT
EST: AATGATTTTCTGCCATCTGAGTCTGCGGTTGAAGCTATCCAGTACTCAAT GGACCTCTATGCTGAATACATTCTCCACACCCTGAGGCGTTGAAGCTTCTCEST: gi|47828474|gb|CK118158.1|CK118158
genomic: AATGATTTTCTGCCATCTGAGTCTGCGGTTGAAGCTATCCAGTACTCAATgtaagcctct ... cccattacagGGACCTCTATGCTGAATACATTCTCCACACCCTGAGGCGTTGAAGCTTCTC
EST: AATGATTTTCTGCCATCTGAGTCTGCGGTTGAAGCTATCCAGTACTCAAT GGACCTCTATGCTGAATACATEST: gi|86078040|gb|DR373797.1|DR373797
genomic: AATGATTTTCTGCCATCTGAGTCTGCGGTTGAAGCTATCCAGTACTCAATgtaagcctct ... cccattacagGGACCTCTATGCTGAATACAT
EST: AATGATTTTCTGCCATCTGAGTCTGCGGTTGAAGCTATCCAGTACTCAAT GGACCTCTATGCTGAATACATTCTCCACACCCTGAGGCGTTGAAGCTTCTC
genomic: AATGATTTTCTGCCATCTGAGTCTGCGGTTGAAGCTATCCAGTACTCAATgtaagcctct ... cccattacagGGACCTCTATGCTGAATACATTCTCCACACCCTGAGGCGTTGAAGCTTCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAAGAAAAACGAGAACAAGGAAGTTGCAGTGAATGATTTTCTGCCATCTGAGTCTGCGGTTGAAGCTATCCAGTACTCAATgtaagcctctgtttctttatcaagaaccaaactctcttacatcttttttagtttgtaacattaaagcaactctggattctgaattccccattacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC