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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAGgtacacaagctgaaatccaacccacctttactaatgttgtcttgtacaaaaaagctgttgttgaattgtgtggataatggcag

Basic information

species Arabidopsis thaliana
transcript AT5G66190.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G66190.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA02G05350.1 (Glycine max), 5'ss of exon 7
TTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAGgtacacaagctgaaatccaacccacctttactaatgttgtcttgtacaaaaaagctgttgttgaattgtgtggataatggcag----------------------------
|||||||||||||| ||||| ||||||||||| || |||||||||||| |||| ||||||||||||   |   | | ||    | ||   || | ||  ||   || ||||       |  ||| || ||    ||  |||                                 
TTCAATGGTTTGGCATGGCTCTTCTTGGGTGTCCCTACAAGCAGCTCATTGCTTTACAAGGAGgtaagaagaatcagatttttcacattatttcaaaacttcagttatacagtttcttttatgtagattttccggggcaatatatactgatacaacttcaattgtatggagcag

upper sequence: AT5G66190.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA11G08230.1 (Glycine max), 5'ss of exon 7
TTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAGgtacacaagctgaa--atccaa---cccacctttactaa---------------tgttgtcttgtacaaaaaagctgttgttgaattgtgtggata---atggcag
|||||||||||||| ||||| ||||||||||| ||||||||||||||||| || || ||||||||     || | ||  || |||      |  || ||| |               || ||| | | |    |  |||  | |  |  | ||  ||||     |||||
TTCAATGGTTTGGCATGGCTCTTCTTGGGTGTCCCCACAAGCAGCTCACTACTTTATAAGGAGgtgagtgagataaatcatgcaaagtttaattttcactcaggaacttctacgatttggtgtttggaatgtgatggcttatatacatatatgctgatatgtggggcag

upper sequence: AT5G66190.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA16G23710.1 (Glycine max), 5'ss of exon 7
TTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAGgtacacaagctgaaatccaacccacctttactaatgttgtcttgtacaaaaaagctgttgttgaattgtgtggataatg-gcag-------------------------
|||||||||||||| ||||| || |||||||| || |||||||||||| ||||||| ||||||||    |   | | ||    | ||   || | ||  ||      |||        |  | | || ||   |    |||   | |                         
TTCAATGGTTTGGCATGGCTCTTTTTGGGTGTCCCTACAAGCAGCTCATTGCTATATAAGGAGgtcagaagaatcagatttttctcattatttcaaaacttcagcgatacggtttgttttatatagattttcctttgcaatatactgatacaacttcaattgtatggagcag

upper sequence: AT5G66190.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv04s0023g03510.t01 (Vitis vinifera), 5'ss of exon 7
TTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAGgtacacaagctgaa------atccaacccacctttac-taatgtt-----gtcttgtacaaaaaagctgttgttgaattgtgtggataatggcag------
|||||||||||||| ||||| ||||||||||| ||||||||||||||||| || || ||||||||   |  |   ||       |    | ||| |  |    || ||     | |     |||   |  |    | | | | ||| | |  |||  |      
TTCAATGGTTTGGCCTGGCTCTTCTTGGGTGTTCCCACAAGCAGCTCACTACTCTATAAGGAGgtgagctggtgcaacatattgtttttctcacttgaatacgatatttgagcgccaaacccaatggaagtaacataggaatttgttggtgttggatggaacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125270725|gb|EL284810.1|EL284810
EST:     CTATACAAGGAG                         GAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAACTTCAGGCTGGACTTT
genomic: CTATACAAGGAGgtacacaagc ... ataatggcagGAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAACTTCAGGCTGGACTTT
EST: gi|125319958|gb|EL334043.1|EL334043
EST:     CGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAG                         GAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAACTTCAGG
genomic: CGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAGgtacacaagc ... ataatggcagGAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAACTTCAGG
EST: gi|125139347|gb|EL178167.1|EL178167
EST:     CTATACAAGGAG                         GAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAACTTCAGGCTGGACTTT
genomic: CTATACAAGGAGgtacacaagc ... ataatggcagGAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAACTTCAGGCTGGACTTT
EST: gi|125124559|gb|EL170453.1|EL170453
EST:     CGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAG                         GAGTTTGAGAAGAT
genomic: CGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAGgtacacaagc ... ataatggcagGAGTTTGAGAAGAT
EST: gi|164128408|gb|ES207440.1|ES207440
EST:     CGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAG                         GAGTTTGAGAAGA
genomic: CGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAGgtacacaagc ... ataatggcagGAGTTTGAGAAGA
EST: gi|124708301|gb|EH799703.1|EH799703
EST:     CGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAG                         GAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAACTTCAGGCTGGACTTT
genomic: CGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAGgtacacaagc ... ataatggcagGAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAACTTCAGGCTGGACTTT
EST: gi|124813036|gb|EH897902.1|EH897902
EST:     GTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAAGGAG                         GAGTTTGAGAAGATGAAGGAGAAGAA
genomic: GTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAA-GGAGgtacacaagc ... ataatggcagGAGTTTGAGAAGATGAAGGAGAAGAA
EST: gi|125067105|gb|EL133733.1|EL133733
EST:     CGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAG                         GAGTTTGAGAAGATGAAGGAGAAG
genomic: CGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAGgtacacaagc ... ataatggcagGAGTTTGAGAAGATGAAGGAGAAG
EST: gi|125216152|gb|EL230235.1|EL230235
EST:     TGGCTTTTCTTGGGTGTACCCACAAGCAGTCTTCACTGCTATACAAGGAG                         GAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAAC
genomic: TGGCTTTTCTTGGGTGTACCCACAAGCAG-C-TCACTGCTATACAAGGAGgtacacaagc ... ataatggcagGAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAAC
EST: gi|124896644|gb|EH972858.1|EH972858
EST:     CTATACAAGGAG                         GAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAACTTCAGGCTGGACTTT
genomic: CTATACAAGGAGgtacacaagc ... ataatggcagGAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAACTTCAGGCTGGACTTT
EST: gi|124885439|gb|EH964341.1|EH964341
EST:     CGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAG                         GAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAACTT
genomic: CGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAGgtacacaagc ... ataatggcagGAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAACTT
EST: gi|125256748|gb|EL270833.1|EL270833
EST:     CGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAG                         GAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAACTTCAGGCTGGACTTT
genomic: CGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAGgtacacaagc ... ataatggcagGAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAACTTCAGGCTGGACTTT
EST: gi|124866960|gb|EH951397.1|EH951397
EST:     CGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAG                         GAGTTTGAGAAGATGAAG
genomic: CGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAGgtacacaagc ... ataatggcagGAGTTTGAGAAGATGAAG
EST: gi|124792864|gb|EH882543.1|EH882543
EST:     CGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAG                         GAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAACTTCAGGCTGGACTTT
genomic: CGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAGgtacacaagc ... ataatggcagGAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAACTTCAGGCTGGACTTT
EST: gi|125260724|gb|EL274809.1|EL274809
EST:     GCTATACAAGGAG                         GAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAACTTCAGGCTGGACTTT
genomic: GCTATACAAGGAGgtacacaagc ... ataatggcagGAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAACTTCAGGCTGGACTTT
EST: gi|124935290|gb|EL012288.1|EL012288
EST:     CGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAG                         GAGTTTGAGAAGATGAAGGAGAAAGAACCCAGACAACTTCAGGCTGGACTT
genomic: CGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAGgtacacaagc ... ataatggcagGAGTTTGAGAAGATGAAGGAGAA-GAACCCAGACAACTTCAGGCTGGACTT
EST: gi|124859562|gb|EH943999.1|EH943999
EST:     CGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAG                         GAGTTTGAGAAGATGAAGGAGAAGAACCCAG
genomic: CGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAGgtacacaagc ... ataatggcagGAGTTTGAGAAGATGAAGGAGAAGAACCCAG
EST: gi|125165636|gb|EL191834.1|EL191834
EST:     CTATACAAGGAG                         GAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAACTTCAGGCTGGACTTT
genomic: CTATACAAGGAGgtacacaagc ... ataatggcagGAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAACTTCAGGCTGGACTTT
EST: gi|125003733|gb|EL076002.1|EL076002
EST:     GTGGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAG                         GAGTTTGAGAAGATGA-GGAGAAGAACCCAGACAACTTCAGGCTGGACTTT
genomic: GT-GGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAGgtacacaagc ... ataatggcagGAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAACTTCAGGCTGGACTTT
EST: gi|124869453|gb|EH953890.1|EH953890
EST:     CGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAG                         GAGTTTGAGAAGATGAAGGAGAAG
genomic: CGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAGgtacacaagc ... ataatggcagGAGTTTGAGAAGATGAAGGAGAAG
EST: gi|124792388|gb|EH882067.1|EH882067
EST:     TGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAG                         GAGTTTGAGAAGATGAAGGAGAAAGAACCCAGACAACTTCAGGCTGGACTT
genomic: TGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAGgtacacaagc ... ataatggcagGAGTTTGAGAAGATGAAGGAGAA-GAACCCAGACAACTTCAGGCTGGACTT
EST: gi|124962342|gb|EL036772.1|EL036772
EST:     CGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAG                         GAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAA
genomic: CGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAGgtacacaagc ... ataatggcagGAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAA
EST: gi|124739899|gb|EH831061.1|EH831061
EST:     GTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAAGGAG                         GAGTTTGAGAAGATGAAGGAGAAGAACC
genomic: GTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAA-GGAGgtacacaagc ... ataatggcagGAGTTTGAGAAGATGAAGGAGAAGAACC
EST: gi|116446281|gb|EG488873.1|EG488873
EST:     CGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAG                         GAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAACTTCAGGCTGGACTTT
genomic: CGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAGgtacacaagc ... ataatggcagGAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAACTTCAGGCTGGACTTT
EST: gi|124838201|gb|EH922640.1|EH922640
EST:     CGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAG                         GAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAACTTCAGGCTGGACTTT
genomic: CGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAGgtacacaagc ... ataatggcagGAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAACTTCAGGCTGGACTTT
EST: gi|125250927|gb|EL265012.1|EL265012
EST:     TGCTATACAAGGAG                         GAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAACTTCAGGCTGGACTTT
genomic: TGCTATACAAGGAGgtacacaagc ... ataatggcagGAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAACTTCAGGCTGGACTTT
EST: gi|125140204|gb|EL178570.1|EL178570
EST:     CGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAG                         GAGTTTGAGAAGATGAAGG
genomic: CGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAGgtacacaagc ... ataatggcagGAGTTTGAGAAGATGAAGG
EST: gi|125267546|gb|EL281631.1|EL281631
EST:     CGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAG                         GAGTTTGAGAA
genomic: CGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAGgtacacaagc ... ataatggcagGAGTTTGAGAA
EST: gi|124809736|gb|EH895160.1|EH895160
EST:     CGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAG                         GAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAACTTCAGGCTGGACTTT
genomic: CGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAGgtacacaagc ... ataatggcagGAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAACTTCAGGCTGGACTTT
EST: gi|124902721|gb|EH976801.1|EH976801
EST:     CGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAG                         GAGTTTGAGAAGATGAAGGAAGAAGAACCCAGACAACTTCAGGCTGGACTT
genomic: CGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAGgtacacaagc ... ataatggcagGAGTTTGAGAAGATGAAGGA-GAAGAACCCAGACAACTTCAGGCTGGACTT
EST: gi|125304341|gb|EL318426.1|EL318426
EST:     CTATACAAGGAG                         GAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAACTTCAGGCTGGACTTT
genomic: CTATACAAGGAGgtacacaagc ... ataatggcagGAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAACTTCAGGCTGGACTTT
EST: gi|124807330|gb|EH893734.1|EH893734
EST:     CGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAG                         GAGTTTGAAGAAGATGAAGGAGAAGAACCCAGACAACT
genomic: CGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAGgtacacaagc ... ataatggcagGAGTTTGA-GAAGATGAAGGAGAAGAACCCAGACAACT
EST: gi|47828632|gb|CK118316.1|CK118316
EST:     CGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAG                         GAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAACTTCAGGCTGGACTTT
genomic: CGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAGgtacacaagc ... ataatggcagGAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAACTTCAGGCTGGACTTT
EST: gi|125311490|gb|EL325575.1|EL325575
EST:     CAGCTCACTGCTATACAAGGAG                         GAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAACTTCAGGCTGGACTTT
genomic: CAGCTCACTGCTATACAAGGAGgtacacaagc ... ataatggcagGAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAACTTCAGGCTGGACTTT
EST: gi|124904032|gb|EH978112.1|EH978112
EST:     CAAGCAGCTCACTGCTATACAAGGAG                         GAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAACTTCAGGCTGGACTTT
genomic: CAAGCAGCTCACTGCTATACAAGGAGgtacacaagc ... ataatggcagGAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAACTTCAGGCTGGACTTT
EST: gi|125205889|gb|EL220843.1|EL220843
EST:     GTGGAC-TTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAG                         GAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAACTTCAGGCTGGACTTT
genomic: GTGG-CTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAGgtacacaagc ... ataatggcagGAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAACTTCAGGCTGGACTTT
EST: gi|125236800|gb|EL250885.1|EL250885
EST:     CTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAG                         GAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAACTTCAGGCTGGACTTT
genomic: CTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAGgtacacaagc ... ataatggcagGAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAACTTCAGGCTGGACTTT
EST: gi|125139945|gb|EL178455.1|EL178455
EST:     CGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAG                         GAGTTTGAGAAGATGAAGG
genomic: CGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAGgtacacaagc ... ataatggcagGAGTTTGAGAAGATGAAGG
EST: gi|124779164|gb|EH869107.1|EH869107
EST:     CGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAG                         GAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAACTTCAGGCTG
genomic: CGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAGgtacacaagc ... ataatggcagGAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAACTTCAGGCTG
EST: gi|86051158|gb|DR346913.1|DR346913
EST:     CGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAG                         GAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAACTTCAGGCTGGACTTT
genomic: CGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAGgtacacaagc ... ataatggcagGAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAACTTCAGGCTGGACTTT
EST: gi|124834007|gb|EH918446.1|EH918446
EST:     GTGGCTTTTCTTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAG                         GAGTTTGAGAAGATGAAAGGAGAAGAACCCAGACAACTTCAGGCTG
genomic: GTGGCTTTTC-TTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAGgtacacaagc ... ataatggcagGAGTTTGAGAAGATGAA-GGAGAAGAACCCAGACAACTTCAGGCTG
EST: gi|125194980|gb|EL209934.1|EL209934
EST:     CGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAG                         GAGTTTGAGAAG
genomic: CGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAGgtacacaagc ... ataatggcagGAGTTTGAGAAG
EST: gi|124924720|gb|EL002789.1|EL002789
EST:     CGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAG                         GAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAACTTCAGGCTGGACTTT
genomic: CGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAGgtacacaagc ... ataatggcagGAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAACTTCAGGCTGGACTTT
EST: gi|125121512|gb|EL168657.1|EL168657
EST:     CGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAG                         GAGTTTGAGAAG
genomic: CGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAGgtacacaagc ... ataatggcagGAGTTTGAGAAG
EST: gi|125014080|gb|EL086349.1|EL086349
EST:     CGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAG                         GAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAACTTCAGGCTGGACTTT
genomic: CGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAGgtacacaagc ... ataatggcagGAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAACTTCAGGCTGGACTTT
EST: gi|125124978|gb|EL170644.1|EL170644
EST:     CGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAG                         GAGTTTGAGAAGATGAAGGAGAAGAA
genomic: CGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAGgtacacaagc ... ataatggcagGAGTTTGAGAAGATGAAGGAGAAGAA
EST: gi|124921817|gb|EL000167.1|EL000167
EST:     TGCTATACAAGGAG                         GAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAACTTCAGGCTGGACTTT
genomic: TGCTATACAAGGAGgtacacaagc ... ataatggcagGAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAACTTCAGGCTGGACTTT
EST: gi|124907297|gb|EH981377.1|EH981377
EST:     CGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAG                         GAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAACTTCAGGCTGGACTT
genomic: CGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAGgtacacaagc ... ataatggcagGAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAACTTCAGGCTGGACTT
EST: gi|47829213|gb|CK118897.1|CK118897
EST:     CGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAG                         GAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAACTTCAGGCTGGACTTT
genomic: CGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAGgtacacaagc ... ataatggcagGAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAACTTCAGGCTGGACTTT
EST: gi|125032008|gb|EL104277.1|EL104277
EST:     CCCACAAGCAGCTCACTGCTATACAAGGAG                         GAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAACTTCAGGCTGGACTTT
genomic: CCCACAAGCAGCTCACTGCTATACAAGGAGgtacacaagc ... ataatggcagGAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAACTTCAGGCTGGACTTT
EST: gi|86085143|gb|DR380902.1|DR380902
EST:     CGTGGCTTTTCTTGGGTGTACCCAGAAGCAGCTCACTGCTATMCAAGGAG                         GAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAACTTCAGGCTGGACTTT
genomic: CGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAGgtacacaagc ... ataatggcagGAGTTTGAGAAGATGAAGGAGAAGAACCCAGACAACTTCAGGCTGGACTTT
EST: gi|124843833|gb|EH928270.1|EH928270
EST:     CGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAG                         GAGTTTGAGAAGATGAAGGAGAAGAACCCAG
genomic: CGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAGgtacacaagc ... ataatggcagGAGTTTGAGAAGATGAAGGAGAAGAACCCAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTCAATGGTTTGGCGTGGCTTTTCTTGGGTGTACCCACAAGCAGCTCACTGCTATACAAGGAGgtacacaagctgaaatccaacccacctttactaatgttgtcttgtacaaaaaagctgttgttgaattgtgtggataatggcag

- - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - -  CAGCTC
- - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG