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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCGATTGTTAAGAGAGTGAACAAGATCCTAGTACGGGCGAAATTGCCTACAACTCCGCCAGAGAGCATGACCGTCAGCATGTTCAAGTCCATAATGGCGgtgagtttttagtgaattccagatgtaaatggaaaaaagttggtaacttttgagcaacttttgagctaagaaaaattcattgaaatgtgtgtggtgatgcag

Basic information

species Arabidopsis thaliana
transcript AT5G66120.2
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125249928|gb|EL264013.1|EL264013
EST:     CAACTCCGCCAGAGAGCATGACCGTCAGCATGTTCAAGTCCATAATGGCG                         GTGGACAAGAAAGTG
genomic: CAACTCCGCCAGAGAGCATGACCGTCAGCATGTTCAAGTCCATAATGGCGgtgagttttt ... ggtgatgcagGTGGACAAGAAAGTG
EST: gi|116421960|gb|EG464552.1|EG464552
EST:     CAACTCCGCCAGAGAGCATGACCGTCAGCATGTTCAAGTCCATAATGGCG                         GTGGACAAGAAAGTGGCAGATGGACTGCTGAG
genomic: CAACTCCGCCAGAGAGCATGACCGTCAGCATGTTCAAGTCCATAATGGCGgtgagttttt ... ggtgatgcagGTGGACAAGAAAGTGGCAGATGGACTGCTGAG
EST: gi|116421951|gb|EG464543.1|EG464543
EST:     CAACTCCGCCAGAGAGCATGACCGTCAGCATGTTCAAGTCCATAATGGCG                         GTGGACAAGAAAGTGGCAGATGGACTGCTGAG
genomic: CAACTCCGCCAGAGAGCATGACCGTCAGCATGTTCAAGTCCATAATGGCGgtgagttttt ... ggtgatgcagGTGGACAAGAAAGTGGCAGATGGACTGCTGAG
EST: gi|116421921|gb|EG464513.1|EG464513
EST:     CAACTCCGCCAGAGAGCATGACCGTCAGCATGTTCAAGTCCATAATGGCG                         GTGGACAAGAAAGTGGCAGATGGACTGCTGAG
genomic: CAACTCCGCCAGAGAGCATGACCGTCAGCATGTTCAAGTCCATAATGGCGgtgagttttt ... ggtgatgcagGTGGACAAGAAAGTGGCAGATGGACTGCTGAG
EST: gi|116472854|gb|EG515446.1|EG515446
EST:     CAACTCCGCCAGAGAGCATGACCGTCAGCATGTTCAAGTCCATAATGGCG                         GTGGACAAGAAAGTGGCAGATGGACTGCTGAGGCTGATTTTTCTCAAAGGC
genomic: CAACTCCGCCAGAGAGCATGACCGTCAGCATGTTCAAGTCCATAATGGCGgtgagttttt ... ggtgatgcagGTGGACAAGAAAGTGGCAGATGGACTGCTGAGGCTGATTCTTCTCAAAGGC
EST: gi|125244220|gb|EL258305.1|EL258305
EST:     CAACNCCGCCAGAGAGCATGACCGTCAGCATGTTCAAGTCCATAATGGCG                         GTGGACAAGAAAGTGG
genomic: CAACTCCGCCAGAGAGCATGACCGTCAGCATGTTCAAGTCCATAATGGCGgtgagttttt ... ggtgatgcagGTGGACAAGAAAGTGG
EST: gi|116421976|gb|EG464568.1|EG464568
EST:     CAACTCCGCCAGAGAGCATGACCGTCAGCATGTTCAAGTCCATAATGGCG                         GTGGACAAGAAAGTGGCAGATGGACTGCTGAG
genomic: CAACTCCGCCAGAGAGCATGACCGTCAGCATGTTCAAGTCCATAATGGCGgtgagttttt ... ggtgatgcagGTGGACAAGAAAGTGGCAGATGGACTGCTGAG
EST: gi|116421964|gb|EG464556.1|EG464556
EST:     CAACTCCGCCAGAGAGCATGACCGTCAGCATGTTCAAGTCCATAATGGCG                         GTGGACAAGAAAGTGGCAGATGGACTGCTGAG
genomic: CAACTCCGCCAGAGAGCATGACCGTCAGCATGTTCAAGTCCATAATGGCGgtgagttttt ... ggtgatgcagGTGGACAAGAAAGTGGCAGATGGACTGCTGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATCGATTGTTAAGAGAGTGAACAAGATCCTAGTACGGGCGAAATTGCCTACAACTCCGCCAGAGAGCATGACCGTCAGCATGTTCAAGTCCATAATGGCGgtgagtttttagtgaattccagatgtaaatggaaaaaagttggtaacttttgagcaacttttgagctaagaaaaattcattgaaatgtgtgtggtgatgcag

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