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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAATATATAGAGGTGTCACAAGGCATCATCAACAAGGTCGCTGGCAAGCAAGAATCGGCCGTGTCGCAGGAAACAAAGATCTTTACCTCGGAACCTTTGgtaaaacgttatcttagtagacaaatgtcctattcttcaccctgaaaaatccagtcattgattcgtatatatgtgtatag

Basic information

species Arabidopsis thaliana
transcript AT5G65510.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G65510.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G317160_T01 (Zea mays), 5'ss of exon 7
TCAATATATAGAGGTGTCACAAGGCATCATCAACAAGGTCGCTGGCAAGCAAGAATCGGCCGTGTCGCAGGAAACAAAGATCTTTACCTCGGAACCTTTGgtaaaacgttatcttagtagacaaatgtcctattcttcaccctgaa--aaatccagtcattgattcgtatatatgtgtatag------------------
                       ||| || ||||| || |||||||| ||||||||||||||||| ||||| ||||| ||||| || || ||||| || |||||     | |  |  |         || || |    | ||||||  || |   |   ||  ||  || |   | |  | |                  
-----------------------GCACCACCAACATGGACGCTGGCAGGCAAGAATCGGCCGTGTTGCAGGGAACAAGGATCTGTATCTTGGAACTTTCGgtaagggcctgtaattttgatttctcctcatactaaagatcctgaatgaatttaggctgttcttttttaaaccggagcgtggcatggaagtggacttgtg

upper sequence: AT5G65510.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA09G33240.1 (Glycine max), 5'ss of exon 8
TCAATATATAGAGGTGTCACAAGGCATCATCAACAAGGTCGCTGGCAAGCAAGAATCGGCCGTGTCGCAGGAAACAAAGATCTTTACCTCGGAACCTTTGgtaaa-acgttatcttagtagacaaatgtcctatt--------cttcaccctgaaaaatccagtcattgattcgtatatatgtgtatag------------
                       |||||||||||| ||| | |||||||||||||| |||||||| || |||||||||||||||||| | ||||| || |||| | |  || ||||     |    | |  |||          |  |   | | ||||    | || ||||  | |  ||| ||  ||            
-----------------------GCATCATCAACAGGGTAGGTGGCAAGCAAGAATTGGCCGTGTAGCTGGAAACAAAGATCTTTACTTGGGAACATTCGgtatacattttttcttccataattgctatgttataaaaaatgattggattgttataaatttcttaatggattattgttaatg-gtgaagtttcactgcatc

upper sequence: AT5G65510.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA01G02760.1 (Glycine max), 5'ss of exon 8
TCAATATATAGAGGTGTCACAAGGCATCATCAACAAGGTCGCTGGCAAGCAAGAATCGGCCGTGTCGCAGGAAACAAAGATCTTTACCTCGGAACCTTTGgtaaa-acgttatctta-gtagacaa-atgtccta------ttcttcaccctgaaaaatccagtcattgattcgtatatatgtgtatag------------
                       |||||||||||| ||| | |||||||||||||| |||||||| || |||||||||||| | ||| | ||||| || |||| | ||||| ||||   |||     ||||  ||      |  |  |   |   |||     | || ||||  | |  ||| ||  ||            
-----------------------GCATCATCAACAGGGTAGGTGGCAAGCAAGAATTGGCCGTGTAGCTGGAAACAAAGATTTATACTTGGGAACATTCGgtatacacgttttcttccatagttgctatgttataaaaaattattgtattgttttaaactttttaatggattattgttaatg-gtcaagtttcaccgcatc

upper sequence: AT5G65510.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA08G38190.1 (Glycine max), 5'ss of exon 6
TCAATATATAGAGGTGTCACAAGGCATCATCAACAAGGTCGCTGGCAAGCAAGAATCGGCCGTGTCGCAGGAAACAAAGATCTTTACCTCGGAACCTTTGgtaaaacgttatcttagtagacaaatgtcctattcttcaccctgaaaaatccag---tcattgattcgtatatatgtgtatag------------------
                       |||||| ||||| ||| | |||||||||||||| ||||| || || |||||||| ||||| ||| | ||||| ||| ||||    ||| | |     |    | || |  | |  ||  |   |      |   | ||| |  | || |||||| || ||                  
-----------------------GCATCACCAACAGGGTAGATGGCAAGCAAGAATTGGCCGAGTTGCGGGAAACAAGGATCTATACTTGGGAACATTTTgtaagtttttagcatctgccattgttatcttgctttatacagtatgattgttggatttaattaaggcttaaatatgt-tagagatccttaatatatatcca

upper sequence: AT5G65510.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv00s0772g00020.t01 (Vitis vinifera), 5'ss of exon 6
TCAATATATAGAGGTGTCACAAGGCATCATCAACAAGGTCGCTGGCAAGCAAGAATCGGCCGTGTCGCAGGAAACAAAGATCTTTACCTCGGAACCTTTGgtaaa-acgttatcttag---tagacaa--atgtcctattcttcaccctgaaaaatccagtcattgattcgtatatatgtgtatag---------------
                       |||||||||||||||||| ||||||||||| || || || || || ||||| ||||| || ||||| || || ||||||||| | |  || |||    |||| ||  ||  |    |   |  |  ||      ||  |  || |  |  |     ||| ||                
-----------------------GCATCATCAACAAGGTCGATGGCAAGCAAGGATAGGTCGAGTTGCTGGAAATAAAGACCTGTACCTGGGGACATTTGgtaaatatgcaattttaactttagataatgataacgagattaacgactagacttgctcaaac-ctggtgagcttcagaatgtctattctggagtgtggact

upper sequence: AT5G65510.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv00s1291g00010.t01 (Vitis vinifera), 5'ss of exon 7
TCAATATATAGAGGTGTCACAAGGCATCATCAACAAGGTCGCTGGCAAGCAAGAATCGGCCGTGTCGCAGGAAACAAAGATCTTTACCTCGGAACCTTTGgtaaa-acgttatcttag---tagacaa--atgtcctattcttcaccctgaaaaatccagtcattgattcgtatatatgtgtatag---------------
                       |||||||||||||||||| ||||||||||| || || || || || ||||| ||||| || ||||| || || ||||||||| | |  || |||    |||| ||  ||  |    |   |  |  ||      ||  |  || |  |  |     ||| ||                
-----------------------GCATCATCAACAAGGTCGATGGCAAGCAAGGATAGGTCGAGTTGCTGGAAATAAAGACCTGTACCTGGGGACATTTGgtaaatatgcaattttaactttagataatgataacgagattaacgactagactggctcaaac-ctggtgagcttcagaatgtctattctggagtgtggact