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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGTCAAGGACGGTGTCCTCTAACACCAGAAGAAATGGGACTTCTTTTAGCTGCTTTCGGATTCGATAACAATACTCGTCTCTATCTTGCATCCCACAAGgtcagaattcttcagttacattacttgtttaaagtctggttataatgtgatgtagcagaatattaatcacgtatttttgaattacag

Basic information

species Arabidopsis thaliana
transcript AT5G65470.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86059776|gb|DR355533.1|DR355533
EST:     CTGCTTTCGGATTCGATAACAATACTCGTCTCTATCTTGCATCCCACAAG                         GTGTATGGAGGAGAAGCTAGAATCTCAACATTAAGACAAGTATTCCCAAGA
genomic: CTGCTTTCGGATTCGATAACAATACTCGTCTCTATCTTGCATCCCACAAGgtcagaattc ... tgaattacagGTGTATGGAGGAGAAGCTAGAATCTCAACATTAAGACAAGTATTCCCAAGA
EST: gi|86088253|gb|DR384012.1|DR384012
EST:     CTGCTTTCGGATTCGATAACAATACTCGTCTCTATCTTGCATCCCACAAG                         GTGTATGGAGGAGAAGCTAGAATCTCAACATTAAGACAAGTATTCCCAAGA
genomic: CTGCTTTCGGATTCGATAACAATACTCGTCTCTATCTTGCATCCCACAAGgtcagaattc ... tgaattacagGTGTATGGAGGAGAAGCTAGAATCTCAACATTAAGACAAGTATTCCCAAGA
EST: gi|125165604|gb|EL191814.1|EL191814
EST:     CTGCTTTCGGATTCGATAACAATACTCGTCTCTATCTTGCATCCCACAAG                         GTGTATGGAGGAGAAGCTAGAATCTCAACATTAAGACA
genomic: CTGCTTTCGGATTCGATAACAATACTCGTCTCTATCTTGCATCCCACAAGgtcagaattc ... tgaattacagGTGTATGGAGGAGAAGCTAGAATCTCAACATTAAGACA