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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAGCCGATGTCTTCTTCGTCATGTCAGGGATGTGGAGAACTTCAGCAGAACGATTCTTCTTATGGATTGGCGGATTTCGACCCTCCGATCTTCTCAAGgtataaaacaaataacaatctagcgtaatgtttaatgaatagaaggaaacaagcaagattacaatgtttcaaatgtttttttttgtag

Basic information

species Arabidopsis thaliana
transcript AT5G65210.3
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G65210.3 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv07s0031g01320.t01 (Vitis vinifera), 5'ss of exon 6
CAAAGCCGATGTCTTCTTCGTCATGTCAGGGATGTGGAGAACTTCAGCAGAACGATTCTTCTTATGGATTGGCGGATTTCGACCCTCCGATCTTCTCAAGgtataaaacaaat-------aacaatctagcgtaatgtttaatgaatagaagg-aaacaagcaagattacaatgtttcaaatgtttttttttgtag----
 || || || || |||| | | ||||| || ||||||| ||| ||||| |||||||| |||||||||||||| || ||||| || || || ||||| ||||| |   |    |       |||||| ||  ||  ||| |  |   | |     |  |   ||| | | |||  |    ||  ||   ||   |      
AAAGGCTGACGTGTTCTACATGATGTCTGGCATGTGGAAAACATCAGCTGAACGATTTTTCTTATGGATTGGAGGGTTTCGCCCTTCTGAGCTTCTAAAGgtgttgtatgcttcatttcaaacaatttaaagttgtgtgtgtttttttgtgcataggctgtcaacagttcaacttggtgaagattcaattggatccaagt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125100456|gb|EL155898.1|EL155898
EST:     CCGATCTTCTCAAG                         GTTTCTTTTGCCACATTTTGATGTCTTGACGGATCAACAACTTCTAGATGT
genomic: CCGATCTTCTCAAGgtataaaaca ... ttttttgtagG-TTCTTTTGCCACATTTTGATGTCTTGACGGATCAACAACTTCTAGATGT