Sequence
atgc intronic sequence ATGC exonic sequenceGTATTATTCTCACAACAATGAGTACATTGAGATATGCCGTAGCTACAAGGCGATATATGATATCCCTTCTGTAAAGGAAAACCCAGAACAATGGATTCCAgtaagtctcgtattgttgtttggatgatcttgtggtagtctacgttctgtaattagcttggattaacttttctcccttgatcctctaaatatag
Basic information
species | Arabidopsis thaliana |
transcript | AT5G64760.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT5G64760.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA05G32030.2 (Glycine max), 5'ss of exon 7
GTATTATTCTCACAACAATGAGTACATTGAGATATGCCGTAGCTACAAGGCGATATATGATATCCCTTCTGTAAAGGAAAACCCAGAACAATGGATTCCAgtaagtctcgtattgttgtttggatgatcttgtggtagtctac-gttctgtaattagcttggattaacttttctccct-tgatcctctaaatatag
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GTATTATTCCCATAACAATGATTATCTTGAAATTTGCCGTTGCTACAAGGCAATATATGAGATTCCATCTGTCAAAGAAGACCCTGCCAAGTGGATTCCAgtaagccttctcttttttct-----gttattgtgagattctgttgttatgcgatattct-------gtttttctgaatattatcttttatgtgtag
upper sequence: AT5G64760.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv07s0031g01970.t01 (Vitis vinifera), 5'ss of exon 7
GTATTATTCTCACAACAATGAGTACATTGAGATATGCCGTAGCTACAAGGCGATATATGATATCCCTTCTGTAAAGGAAAACCCAGAACAATGGATTCCAgtaagtctcgtattgttgtttggatgatcttgtggtagtctacgttctgtaattagcttggattaacttttctcccttgatcctctaaatatag
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GTATCACTCCCACAGCAATGATTACCTTGAAATTTGTCGTAGCTATAAGGCGATATATGAAATCCCATCTGTCAGAGAAGATCCAGCTCAGTGGATACCGgtaaa----gaatcttt-----------tccatgtatgcctttgcccttttgtttttttggagcaactct--------aacaatctgcatgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164091300|gb|ES196176.1|ES196176EST: CGATATATGATATCCCTTCTGTAAAGGAAAACCCAGAACAATGGATTCCA GTCCTGAGAAAGATTTG
genomic: CGATATATGATATCCCTTCTGTAAAGGAAAACCCAGAACAATGGATTCCAgtaagtctcg ... ctaaatatagGTCCTGAGAAAGATTTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTATTATTCTCACAACAATGAGTACATTGAGATATGCCGTAGCTACAAGGCGATATATGATATCCCTTCTGTAAAGGAAAACCCAGAACAATGGATTCCAgtaagtctcgtattgttgtttggatgatcttgtggtagtctacgttctgtaattagcttggattaacttttctcccttgatcctctaaatatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA