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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTAAGAACCCCAACACACAAAGGGCGAAGAGTTTGCTTGAGATCCCAAGTTCTCACCGTATTATAATAAGTGGTACACCAATCCAGAACAATCTCAAGgtattattgtctatgacatttaacgttggtcagttcttgcaattctaatgctgtctattgattccatcttcatattttcag

Basic information

species Arabidopsis thaliana
transcript AT5G63950.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G63950.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA08G00400.1 (Glycine max), 5'ss of exon 7
TATTAAGAACCCCAACACACAAAGGGCGAAGAGTTTGCTTGAGATCCCAAGTTCTCACCGTATTATAATAAGTGGTACACCAATCCAGAACAATCTCAAGgtattattgtctatgacat----ttaacgttggtcagttcttgcaattctaatgctgtctattgattccatcttcatattttcag--------------------------------------------------------------
||| |||||||| | |||||||||||| || ||||||||||| || |||||| |||| || ||||| || || || || ||  | || || || || |||||||| |  | ||     |    || |   |  ||| ||  ||   || |||  | || | ||   |     ||  |  |   |                                                               
TATAAAGAACCCAAGCACACAAAGGGCTAAAAGTTTGCTTGAAATACCAAGTGCTCATCGCATTATCATTAGCGGCACTCCTTTGCAAAATAACCTGAAGgtattttgatgtaaacagtcttgtttataatcatcaattaatggttttttaacacggtgtttttgctttgctttttttgtagtaatgattgaaatttagattattctaccttgtttaatggttttcattcttaaaacttcctaacag

upper sequence: AT5G63950.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA05G32740.1 (Glycine max), 5'ss of exon 5
TATTAAGAACCCCAACACACAAAGGGCGAAGAGTTTGCTTGAGATCCCAAGTTCTCACCGTATTATAATAAGTGGTACACCAATCCAGAACAATCTCAAGgtattattg-tctatgacat----ttaacgttggtcagttcttgcaattctaatgctgtctattgattccatcttcatattttcag---------------------------------------------------------------
||| |||||||| | |||||||||||| || ||||||||||| || |||||| ||||  | ||||| || || || |||||  | || || ||||| |||||||| ||| | ||     |    || |   |  ||| ||  ||   || |||    || | |    |     ||  | |||                                                                   
TATAAAGAACCCTAGCACACAAAGGGCTAAAAGTTTGCTTGAAATACCAAGTGCTCATTGCATTATCATTAGCGGCACACCTTTGCAAAATAATCTGAAGgtatttttgatgtaaactgtcttgtttataatcatcaattaatgtttttttaacatggtgtttctgctttgcttttttttttaataataattgaaatttagattattgtaccttgtttaatggttttcattcttaaaacttcctaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164077042|gb|ES187790.1|ES187790
EST:     GAACAATCTCAAG                         GAACTGTGGGCTCTCTTCAACTTCAGCTGCCCTGGGTTACTCGGTGACAAG
genomic: GAACAATCTCAAGgtattattgt ... atattttcagGAACTGTGGGCTCTCTTCAACTTCAGCTGCCCTGGGTTACTCGGTGACAAG