1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GAGGTTCTGTATTGCGCCAAGAGGGCTGGTGTTACTCACATACTCAAAGCTGGTGGAGCGCAGgtgtgtctgtgttagttttttttcgcttatgttttcatgctggtgattgtattttttctctctaagattgtagacatttcgattttgttttgcag
species | Arabidopsis thaliana |
transcript | AT5G63890.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GCGCCAAGAGGGCTGGTGTTACTCACATACTCAAAGCTGGTGGAGCGCAG GCTATAGCTGCCATGGCCTGGGGGGACAGATTEST: gi|124730155|gb|EH821557.1|EH821557
genomic: GCGCCAAGAGGGCTGGTGTTACTCACATACTCAAAGCTGGTGGAGCGCAGgtgtgtctgt ... tgttttgcagGCTATAGCTGCCATGGCCTGGGGG-ACAGATT
EST: GCGCCAAGAGGGCTGGTGTTACTCACATACTCAAAGCTGGTGGAGCGCAG GCTATAGCTGCCATGGCCEST: gi|125011540|gb|EL083809.1|EL083809
genomic: GCGCCAAGAGGGCTGGTGTTACTCACATACTCAAAGCTGGTGGAGCGCAGgtgtgtctgt ... tgttttgcagGCTATAGCTGCCATGGCC
EST: GCGCCAAGAGGGCTGGTGTTACTCACATACTCAAAGCTGGTGGAGCGCAG GCTATAGCTGCCATGGCCTGGGGGAC
genomic: GCGCCAAGAGGGCTGGTGTTACTCACATACTCAAAGCTGGTGGAGCGCAGgtgtgtctgt ... tgttttgcagGCTATAGCTGCCATGGCCTGGGGGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGGTTCTGTATTGCGCCAAGAGGGCTGGTGTTACTCACATACTCAAAGCTGGTGGAGCGCAGgtgtgtctgtgttagttttttttcgcttatgttttcatgctggtgattgtattttttctctctaagattgtagacatttcgattttgttttgcag
- - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG