Sequence
atgc intronic sequence ATGC exonic sequenceCACACTAAGTGTGAAAGATGGTGGAAAAGCTGTGATGATTGGACTCTCACAAGCTGGTTCCGTTGGAGAAATTGACATAAATCGACTTGTTCGTAGAAAGgtttggggttcttactctctctctctcggccttgttagaagaaagtctctggtactgagattgtcttttaagatcatgatattgaatctctttttgttctgtttttccaattttttgtgaag
Basic information
species | Arabidopsis thaliana |
transcript | AT5G63620.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT5G63620.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA08G00740.2 (Glycine max), 5'ss of exon 8
CACACTAAGTGTGAAAGATGGTGGAAAAGCTGTGATGATTGGACTCTCACAAGCTGGTTCCGTTGGAGAAATTGACATAAATCGACTTGTTCGTAGAAAGgtttggggttcttactctctctctctcggccttgttag-aagaaagtctctggtactgagat-tgtcttttaagatcatgatattgaatctctttttgttctgtttttccaattttttgtgaag
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TACACAAAGTGTGAAGGATGGGGGAAAAGCTGTGATGATTGGACTGGCACAAGCTGGTTCTTTAGGAGAGGTGGATATAAATCGGCTTGTTCGCAGAAAGgtgtgttctctgtact-tatatacttaactgttgtaaatgtggttgttaccggtactcccacatgttaatggttaccagtattttaaattgtttcttatga-----------------------
upper sequence: AT5G63620.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA05G33140.1 (Glycine max), 5'ss of exon 7
CACACTAAGTGTGAAAGATGGTGGAAAAGCTGTGATGATTGGACTCTCACAAGCTGGTTCCGTTGGAGAAATTGACATAAATCGACTTGTTCGTAGAAAGgtttggggttcttactctctctctctcggccttgttagaa--gaaagtctctggtactgagattgtcttttaagatcatgatattgaatctctttttgttctgtttttccaattttttgtgaag
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CACACAAAGTGTGAAGGATGGGGGGAAAGCTGTGATGATTGGACTGGCACAAGCTGGTTCTTTAGGAGAGGTGGATATAAATCGGCTTGTTCGCCGAAAGgtgtgtt-ctcttacttaactgttgtcaatgtgattgttaccggtactcccacatataaccactacctccattcagaatgaatttaaactgcttattatga-----------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86085730|gb|DR381489.1|DR381489EST: AAGCTGGTTCCGTTGGAGAAATTGACATAAATCGACTTGTTCGTAGAAAG ATAAAAGTTATAGGATCTTATGGAGGAAGAGCAAGACAGGATCTTCCTAAA
genomic: AAGCTGGTTCCGTTGGAGAAATTGACATAAATCGACTTGTTCGTAGAAAGgtttggggtt ... ttttgtgaagATAAAAGTTATAGGATCTTATGGAGGAAGAGCAAGACAGGATCTTCCTAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CACACTAAGTGTGAAAGATGGTGGAAAAGCTGTGATGATTGGACTCTCACAAGCTGGTTCCGTTGGAGAAATTGACATAAATCGACTTGTTCGTAGAAAGgtttggggttcttactctctctctctcggccttgttagaagaaagtctctggtactgagattgtcttttaagatcatgatattgaatctctttttgttctgtttttccaattttttgtgaag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA