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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGTATGCACCAACGACTCTGGCTCCTGCCCGCGATTTCTGGACCCTGAGATACACAACGAGCCTCGACAATGGGAGTTTTGTGgtatgcagctctcataatgtctagtgtttacagaaaaactctgggatcttgatgtttttcatatgtctttaaaag

Basic information

species Arabidopsis thaliana
transcript AT5G60690.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G60690.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA12G08080.1 (Glycine max), 5'ss of exon 7
ACGTATGCACCAACGACTCTGGCTCCTGCCCGCGATTTCTGGACCCTGAGATACACAACGAGCCTCGACAATGGGAGTTTTGTGgtatgcagctctcataatg------tcta-gtgtttacagaaaaactctgggatcttgatgtttttcatatgtctttaaaag------------------
|| ||||| ||||| || |||||||||||||| ||||||||||| |||||||| || || ||| | || ||||| ||| |||||||  |||  | |  | ||       ||||  |   | || | ||  | ||  |   ||  || ||   | |  |||||||                    
ACATATGCTCCAACAACACTGGCTCCTGCCCGGGATTTCTGGACGCTGAGATATACCACCAGCTTGGAAAATGGTAGTCTTGTGgtgagcatgttttgtcatttgatgctctatatagattcatagaatttatgtaagaatgtcgtgttgtgttttgctttaaattcttcttgacgcattatat

upper sequence: AT5G60690.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA11G20520.1 (Glycine max), 5'ss of exon 7
ACGTATGCACCAACGACTCTGGCTCCTGCCCGCGATTTCTGGACCCTGAGATACACAACGAGCCTCGACAATGGGAGTTTTGTGgtatgcag-----ctctcataatgtctagtgt----ttacagaaaaactctgggatcttgatgtttttcatatgtctttaaaag----------------
|| ||||| ||||| || ||||||||||| || ||||||||||| |||||||| || || ||  | || ||||| ||| |||||||  | |       |||  | ||| ||  | |    | | ||||    | ||  |   || ||| ||   | ||  || ||                   
ACATATGCTCCAACAACACTGGCTCCTGCTCGGGATTTCTGGACTCTGAGATATACCACAAGTTTGGAAAATGGCAGTCTTGTGgtgagtatgttttgtcttttgatgccttatatagattcatagaatttatatgtaagactgttgtgttgtgtttgctttgaattcttcttgatgcattata

upper sequence: AT5G60690.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv06s0004g02800.t01 (Vitis vinifera), 5'ss of exon 7
ACGTATGCACCAACGACTCTGGCTCCTGCCCGCGATTTCTGGACCCTGAGATACACAACGAGCCTCGACAATGGGAGTTTTGTGgtatgcagctctcataat------gtctagtgtttacagaaaaact-ctgggatcttgatgtttttcatatgtctttaaaag------------------
|  ||||| ||||| || ||||||||||| || ||||||||||| || |||||||| || ||  | |||||||| ||| | |||||||| |  |||     |      | |   ||  |  | |    || ||     | |||| | ||    ||    |  | |                   
ATATATGCCCCAACTACGCTGGCTCCTGCACGGGATTTCTGGACTCTAAGATACACCACCAGTTTGGACAATGGCAGTCTCGTGgtatgtatttcttccggttttgtagccagatgcattgacatgtgctactcatcacctgatttattaggaatactatggacactattataaaataattatt