1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CTTATTGGCTACACAGGGAATGAAGACCCTAAAAAATACTTTTTCGATGGCGAGATCCAGTCAGATAAAATTAAGgtatgtctttaaagtttctttcattcgtaaaaattattatttcgcggtgacatgtaaagattgttggttaaatttatacctttaaatttttaatctcctgcag
species | Arabidopsis thaliana |
transcript | AT5G60640.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ACTTTTTCGATGGCGAGATCCAGTCAGATAAAATTAAG ATATTTGGGGAGGATTTCCTGAACGACAAGTTAAAGCCTTTCTATAAGTCAEST: gi|125165477|gb|EL191743.1|EL191743
genomic: ACTTTTTCGATGGCGAGATCCAGTCAGATAAAATTAAGgtatgtcttt ... tctcctgcagATATTTGGGGAGGATTTCCTGAACGACAAGTTAAAGCCTTTCTATAAGTCA
EST: CAGATAAAATTAAG ATATTTGGGGAGGATTTCCTGAACGACAAGTTAAAGCCTTTCTATAAGTCAEST: gi|86064530|gb|DR360287.1|DR360287
genomic: CAGATAAAATTAAGgtatgtcttt ... tctcctgcagATATTTGGGGAGGATTTCCTGAACGACAAGTTAAAGCCTTTCTATAAGTCA
EST: ACCCTAAAAAATACTTTTTCGATGGCGAGATCCAGTCAGATAAAATTAAG ATATTTGGGGA
genomic: ACCCTAAAAAATACTTTTTCGATGGCGAGATCCAGTCAGATAAAATTAAGgtatgtcttt ... tctcctgcagATATTTGGGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTATTGGCTACACAGGGAATGAAGACCCTAAAAAATACTTTTTCGATGGCGAGATCCAGTCAGATAAAATTAAGgtatgtctttaaagtttctttcattcgtaaaaattattatttcgcggtgacatgtaaagattgttggttaaatttatacctttaaatttttaatctcctgcag
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