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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCAGACTTCTTAAATGCCAGAATTAATGGCCTGCCTGTGAAGGAGGTTATTACAGATCACAAATGGTTAGAAGAGGGATTCACTGAGAGTGTGCAGAAGgtaagatggcgattcctctgataatgaaatgatttctgcaatgagatataatgttttgctgagtaagtttgcgttttgttttacag

Basic information

species Arabidopsis thaliana
transcript AT5G58330.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124965835|gb|EL039987.1|EL039987
EST:     AGGGATTCACTGAGAGTGTGCAGAAG                         AGAGGTGGGTTATTAATTCAGAAATGGGGTCGATCTTCTGCTGCTTCTACT
genomic: AGGGATTCACTGAGAGTGTGCAGAAGgtaagatggc ... tgttttacagAGAGGTGGGTTATTAATTCAGAAATGGGGTCGATCTTCTGCTGCTTCTACT
EST: gi|86080979|gb|DR376736.1|DR376736
EST:     TTAGAAGAGGGATTCACTGAGAGTGTGCAGAAG                         AGAGGTGGGTTATTAATTCAGAAATGGGGTCGATCTTCTGCTGCTTCTACT
genomic: TTAGAAGAGGGATTCACTGAGAGTGTGCAGAAGgtaagatggc ... tgttttacagAGAGGTGGGTTATTAATTCAGAAATGGGGTCGATCTTCTGCTGCTTCTACT
EST: gi|116454058|gb|EG496650.1|EG496650
EST:     TTACAGATCACAAATGGTTAGAAGAGGGATTCACTGAGAGTGTGCAGAAG                         AGAGGTGGGTTATTAATTCAGAAATGGGGTCGATCTTCTGCTGCTTCTACT
genomic: TTACAGATCACAAATGGTTAGAAGAGGGATTCACTGAGAGTGTGCAGAAGgtaagatggc ... tgttttacagAGAGGTGGGTTATTAATTCAGAAATGGGGTCGATCTTCTGCTGCTTCTACT
EST: gi|86081501|gb|DR377258.1|DR377258
EST:     GATTCACTGAGAGTGTGCAGAAG                         AGAGGTGGGTTATTAATYCAGAAATGGGGTCGATCTTCTGCTGCTTCTACT
genomic: GATTCACTGAGAGTGTGCAGAAGgtaagatggc ... tgttttacagAGAGGTGGGTTATTAATTCAGAAATGGGGTCGATCTTCTGCTGCTTCTACT
EST: gi|125295265|gb|EL309350.1|EL309350
EST:     TTACAGATCACAAATGGTTAGAAGAGGGATTCACTGAGAGTGTGCAGAAG                         AGAGGTGGGTTATTAATTCAGAAAT
genomic: TTACAGATCACAAATGGTTAGAAGAGGGATTCACTGAGAGTGTGCAGAAGgtaagatggc ... tgttttacagAGAGGTGGGTTATTAATTCAGAAAT
EST: gi|116454053|gb|EG496645.1|EG496645
EST:     TTACAGATCACAAATGGTTAGAAGAGGGATTCACTGAGAGTGTGCAGAAG                         AGAGGTGGGTTATTAATTCAGAAATGGGGTCGATCTTCTGCTGCTTCTACT
genomic: TTACAGATCACAAATGGTTAGAAGAGGGATTCACTGAGAGTGTGCAGAAGgtaagatggc ... tgttttacagAGAGGTGGGTTATTAATTCAGAAATGGGGTCGATCTTCTGCTGCTTCTACT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCCAGACTTCTTAAATGCCAGAATTAATGGCCTGCCTGTGAAGGAGGTTATTACAGATCACAAATGGTTAGAAGAGGGATTCACTGAGAGTGTGCAGAAGgtaagatggcgattcctctgataatgaaatgatttctgcaatgagatataatgttttgctgagtaagtttgcgttttgttttacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGG