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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCACGCTCTCTGGTCACACTTGTCATCACGAGCTTGAAACTGCAAGAATTAATGGTTTACTTGGCAACATTGATGCAAACACTGGCGATGCTCAAACTGgtaatttttcaatttcagctctcttgattgttaacacctcctaaccagattctgattgaacaaagttctctcattctcttaacag

Basic information

species Arabidopsis thaliana
transcript AT5G57655.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G57655.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os07g47290.3 (Oryza sativa), 5'ss of exon 15
GCCACGCTCTCTGGTCACACTTGTCATCACGAGCTTGAAACTGCAAGAATTAATGGTTTACTTGGCAACATTGATGCAAACACTGGCGATGCTCAAACTGgtaatttttcaatttcagctctcttgattgttaacacctcctaacc-agattctgattgaacaaagttctctcattctcttaacag-------------------------------
                     || || || |||||||| |||||||||||||||||| | ||||| || |||||||| |||||||| ||| | || |  ||||  |   ||         ||| |||  ||   ||| |  |  |  | |||||  ||  |    | | | | |    | ||  |                                
--------------------CTGCCACCATGAGCTTGAGACTGCAAGAATTAATGGTCTGCTTGGGAATATTGATGCCAACACTGGTGATCCCCAGATCGgtatgtgcgcatgcctttagctcctgaaagt---cacattatgcctgaaattcttgtttgatttcgatttgtgacatacataggatataacatttcaatgcttatatatatggacag

upper sequence: AT5G57655.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G005493_T01 (Zea mays), 5'ss of exon 15
GCCACGCTCTCTGGTCACACTTGTCATCACGAGCTTGAAACTGCAAGAATTAATGGTTTACTTGGCAACATTGATGCAAACACTGGCGATGCTCAAACTGgtaatttttcaatttcagctctcttgattgttaacacctcctaaccagattctgattgaacaaagttctctcattctcttaacag--------------------------------------------------------
                     || ||||| || || || |||||| | ||||||||  | ||||| |||||||||||||||||||| ||| |||||  |||||| | | || | |   |     | |||||    |      || || |     ||  | |    |  |||| || |    | ||                                                        
--------------------CTGCCATCATGAACTGGAGACTGCACGCATTAATGGGCTGCTTGGGAACATTGATGCAAACACTGGTGATCCTCAAGTTGgtaagtgt-cactgtttacataactcattgt-gttatactggaagcatac----atgcatctctttcttctctttttagagaaagaaaagtaataaaaagaatgaggcatgcatagtaacttatcttccccttatgagcag

upper sequence: AT5G57655.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA17G07380.1 (Glycine max), 5'ss of exon 15
GCCACGCTCTCTGGTCACACTTGTCATCACGAGCTTGAAACTGCAAGAATTAATGGTTTACTTGGCAACATTGATGCAAACACTGGCGATGCTCAAACTGgtaatttttcaatttcagctctcttgattgttaacacctcctaaccagattctgattgaacaaagttctctcattctcttaacag-------------------------------
                    ||||||||| ||||| ||||||||||| || ||||| || || || || ||||||||||||||||| ||| |||||  |||||  | |  | | ||   | |  | | |  |   |  |   |   |||  |    |||||  || |  |  |       ||  |                               
--------------------TTGTCATCATGAGCTCGAAACTGCAAGGATCAATGGATTGCTGGGTAATATTGATGCAAACACTGGTGATCCTCAAGTTGgtatgtatgaattctctcatttaataaatcatgtaaattttaacatagaaaca---tgaactgaggtaacataccacaagaatggaagttgtaatatgaagctgttattactgcag

upper sequence: AT5G57655.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv11s0052g01710.t01 (Vitis vinifera), 5'ss of exon 16
GCCACGCTCTCTGGTCACACTTGTCATCACGAGCTTGAAACTGCAAGAATTAATGGTTTACTTGGCAACATTGATGCAAACACTGGCGATGCTCAAACTGgtaatttt-tcaatttcagctctctt-----gattgttaacacctcctaaccagatt-ctgattgaaca-aagttctctcattctcttaacag-----------------------------------
                     |||||||| |||||||| ||||||||| | ||||||||||| || || |||||||| |||||||||||  |||||| ||||| |  | || |  | | ||   ||      ||| |||        |  |||  || | |  |  ||| || ||     |||||  | |                                      
--------------------CTGTCATCATGAGCTTGAGACTGCAAGACTCAATGGTTTACTGGGAAATATTGATGCTAACACTGGCGACCCTCAAATTGgtattactgtctacataaactgcttttctagaatttttacttttcttttgccattttacaggcttgacataaattagtatattctgattatgagattgtaacctatagctgttgtttcatgaatgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86084312|gb|DR380071.1|DR380071
EST:     TAATGGTTTACTTGGCAACATTGATGCAAACACTGGCGATGCTCAAACTG                         GATGGGATACAGATCAGTTTCTTACAGATGTTGGAGAAGCAACCATGGTTA
genomic: TAATGGTTTACTTGGCAACATTGATGCAAACACTGGCGATGCTCAAACTGgtaatttttc ... ctcttaacagGATGGGATACAGATCAGTTTCTTACAGATGTTGGAGAAGCAACCATGGTTA
EST: gi|124906073|gb|EH980153.1|EH980153
EST:     TGGTTTACTTGGCAACATTGATGCAAACACTGGCGATGCTCAAACTG                         GATGGGATACAGATCAGTTTCTTACAGATGTTGGAGAAGCAACCATGG
genomic: TGGTTTACTTGGCAACATTGATGCAAACACTGGCGATGCTCAAACTGgtaatttttc ... ctcttaacagGATGGGATACAGATCAGTTTCTTACAGATGTTGGAGAAGCAACCATGG
EST: gi|163980124|gb|ES148391.1|ES148391
EST:     GCGATGCTCAAACTG                         GATGGGATACAGATCAGTTTCTTACAGATGTTGGAGAAGCAACCATGGTTA
genomic: GCGATGCTCAAACTGgtaatttttc ... ctcttaacagGATGGGATACAGATCAGTTTCTTACAGATGTTGGAGAAGCAACCATGGTTA