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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAATTCTTCTAACCGGGGCACCTGGTACTGGAAAGACATTGCTGGCCAAAgtaagttctcacatagttgttatattgtcgtctcttgttgaattggttattacttattatgagtgtgtgttttcacagtcatattccacttaataataaattcttattacgctaccaatattctgattgattttacaataagttaacacggtttaaattttgaag

Basic information

species Arabidopsis thaliana
transcript AT5G53170.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124825286|gb|EH910152.1|EH910152
EST:     CTGGTACTGGAAAGACATTGCTGGCCAAA                         GCAATTGCTGGAGAAGCTGGAGTACCCTTCTTCTATAGAGCTGGATCTGTA
genomic: CTGGTACTGGAAAGACATTGCTGGCCAAAgtaagttctc ... aattttgaagGCAATTGCTGGAGAAGCTGGAGTACCCTTCTTCTATAGAGCTGGATCTG-A
EST: gi|164091126|gb|ES182709.1|ES182709
EST:     GAATTCTTCTAACCGGGGCACCTGGTACTGGAAAGACATTGCTGGCCAAA                         GCAATTGCTGGAGAAGCTGGAGTACCCTTCTTCTA
genomic: GAATTCTTCTAACCGGGGCACCTGGTACTGGAAAGACATTGCTGGCCAAAgtaagttctc ... aattttgaagGCAATTGCTGGAGAAGCTGGAGTACCCTTCTTCTA