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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACATGGAGAGTAGGTGGGGTGTTGGCTATGTCCCGGGCCTTTGGTAACAGAATGCTGAAGCAATTCGTTGTTGCTGAACCCGAGATACAAgtaaccgcttctaactgcaacttactgtttttgtccaagggtgtcatgttgttctcatcatctgtagtatcacccatgtgaaatctccgagttttaagtttttgtgaacatgcttctgtgcttatttttcag

Basic information

species Arabidopsis thaliana
transcript AT5G53140.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116411371|gb|EG453963.1|EG453963
EST:     TTGGTAACAGAATGCTGAAGCAATTCGTTGTTGCTGAACCCGAGATACAA                         GATCTAGAGATAGATCATGAGGCCGAGTTGCTTGTGCTT
genomic: TTGGTAACAGAATGCTGAAGCAATTCGTTGTTGCTGAACCCGAGATACAAgtaaccgctt ... tatttttcagGATCTAGAGATAGATCATGAGGCCGAGTTGCTTGTGCTT
EST: gi|116439162|gb|EG481754.1|EG481754
EST:     TTGGTAACAGAATGCGGAAGCAATTCGTTGTTGCTGAACCCGAGATACAA                         GATCTAGAGATAGATCATGAGGCCGAGTTGCTTGTGCTTGCAAGTGACGGT
genomic: TTGGTAACAGAATGCTGAAGCAATTCGTTGTTGCTGAACCCGAGATACAAgtaaccgctt ... tatttttcagGATCTAGAGATAGATCATGAGGCCGAGTTGCTTGTGCTTGCAAGTGACGGT
EST: gi|124972259|gb|EL045965.1|EL045965
EST:     GAAGCAATTCGTTGTTGCTGAACCCGAGATACAA                         GATCTAGAGATAGATCATGAGGCCGAGTTG
genomic: GAAGCAATTCGTTGTTGCTGAACCCGAGATACAAgtaaccgctt ... tatttttcagGATCTAGAGATAGATCATGAGGCCGAGTTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAACATGGAGAGTAGGTGGGGTGTTGGCTATGTCCCGGGCCTTTGGTAACAGAATGCTGAAGCAATTCGTTGTTGCTGAACCCGAGATACAAgtaaccgcttctaactgcaacttactgtttttgtccaagggtgtcatgttgttctcatcatctgtagtatcacccatgtgaaatctccgagttttaagtttttgtgaacatgcttctgtgcttatttttcag

- - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA