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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGACAAGAGGTGTTGACGAAGAGAATCTTCTTAGTAATCTTCCCAAAGATCTTAGACGCGACATCAAACGTCATCTCTGTCTCGCCCTTCTCATGCGGgtaaagaagaaatcatctcctctctttactcgatttctcatttattgtcaacatcactcgtaaccgcatcttgtttttgttggttctag

Basic information

species Arabidopsis thaliana
transcript AT5G53130.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G53130.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv16s0050g02560.t01 (Vitis vinifera), 5'ss of exon 7
AGAGACAAGAGGTGTTGACGAAGAGAATCTTCTTAGTAATCTTCCCAAAGATCTTAGACGCGACATCAAACGTCATCTCTGTCTCGCCCTTCTCATGCGGgtaaaga-agaaatcatctcctctctttactcgatttctcatttattgtcaacatcactcgtaaccgc-atcttgtttttgttggttctag---------
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AGAAACCAGAGGTGTTGACGAACAGAATCTACTCATTAATCTTCCCAAGGACCTTAGAAGGGACATAAAACGCCATCTCTGCTTGGCTCTGCTCAGGAGAgtgagttcacctacccttttctagaattgctcttactattatttgcccttcaagtgaatgagaatatctatataatttctgaattagcgagatatgcatt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86059209|gb|DR354966.1|DR354966
EST:     ATCTTAGACGCGACATCAAACGTCATCTCTGTCTCGCCCTTCTCATGAGG                         GTCCCCATGTTTGAGAAAATGGACGAACAGCTTCTTGATGCGCTCTGTGAC
genomic: ATCTTAGACGCGACATCAAACGTCATCTCTGTCTCGCCCTTCTCATGCGGgtaaagaaga ... ttggttctagGTCCCCATGTTTGAGAAAATGGACGAACAGCTTCTTGATGCGCTCTGTGAC