1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTGTTACTATTGATGAGAAATCTATCCATCAACTTGTCTAGTCCTGACTTTGAGGATCATgtaagtattttactccacaaactactagtcaattttaactcgaaaccctataccagaactaacctcaagactcttattgatttcaaaaacaatag
species | Arabidopsis thaliana |
transcript | AT5G52660.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TGATGAGAAATCTATCCATCAACTTGTCTAGTCCTGACTTTGAGGATCAT AGACGGCTTCTTTCGTCTTAATGATATCGEST: gi|116415883|gb|EG458475.1|EG458475
genomic: TGATGAGAAATCTATCCATCAACTTGTCTAGTCCTGACTTTGAGGATCATgtaagtattt ... aaaacaatagAGACGGCTTCTTTCGTCTTA-TGATATCG
EST: TGATGAGAAATCTATCCATCAACTTGTCTAGTCCTGACTTTGAGGATCAT AGACGGCTTCTTTCGTCTTATGATATCGGATCTGAGACAGCAACTGATCATEST: gi|164157860|gb|ES189497.1|ES189497
genomic: TGATGAGAAATCTATCCATCAACTTGTCTAGTCCTGACTTTGAGGATCATgtaagtattt ... aaaacaatagAGACGGCTTCTTTCGTCTTATGATATCGGATCTGAGACAGCAACTGATCAT
EST: CTTGTCTAGTCCTGACTTTGAGGATCAT AGACGGCTTCTTTCGTCTTATGATATCGGATCTGAGACAGCAACTGATCATEST: gi|86080283|gb|DR376040.1|DR376040
genomic: CTTGTCTAGTCCTGACTTTGAGGATCATgtaagtattt ... aaaacaatagAGACGGCTTCTTTCGTCTTATGATATCGGATCTGAGACAGCAACTGATCAT
EST: TGATGAGAAATCTATCCATCAACTTGTCTAGTCCTGACTTTGAGGATCAT AGACGGCTTCTTTCGTCTTATGATATCGGATCTGAGACAGCAACTGATCAT
genomic: TGATGAGAAATCTATCCATCAACTTGTCTAGTCCTGACTTTGAGGATCATgtaagtattt ... aaaacaatagAGACGGCTTCTTTCGTCTTATGATATCGGATCTGAGACAGCAACTGATCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTTACTATTGATGAGAAATCTATCCATCAACTTGTCTAGTCCTGACTTTGAGGATCATgtaagtattttactccacaaactactagtcaattttaactcgaaaccctataccagaactaacctcaagactcttattgatttcaaaaacaatag
- - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT