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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAAGCGGTTGAAAAGGATGCTACGAAAACCGCGGTTATGGATGGAACCGTTCATCCACTTACTAGCTACGTTATAAATTATGTCAAGTTCTTGTTCGAgtaagtaactttacttagaccaacggacattgtcatttttgttggactaatcagtggtttttgggatatggaaacag

Basic information

species Arabidopsis thaliana
transcript AT5G52340.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G52340.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA13G05040.1 (Glycine max), 5'ss of exon 7
AAGAAGCGGTTGAAAAGGATGCTACGAAAACCGCGGTTATGGATGGAACCGTTCATCCACTTACTAGCTACGTTATAAATTATGTCAAGTTCTTGTTCGAgtaagtaac---------tttactta--gaccaacggacattgt--catttttg-ttggactaatc-agtggtttttgggatatggaaacag--------
| ||||| |||||||| ||||| || |||||  | |||||||||||||| ||||| ||||| || ||||| || || ||||| || |||||  | |  |||||||| |          || | |||  |       |  |||||  | | ||   ||  | |  || | ||| || |    | |  ||| |         
AGGAAGCAGTTGAAAAAGATGCCACTAAAACTACTGTTATGGATGGAACTGTTCACCCACTAACAAGCTATGTGATCAATTACGTGAAGTTTCTTTATGAgtaagtgatgctagagtgttaatttatggcttgcttgtaattgtttcgtcttcacttacatttgtctaatgggttatatcctttttaaatatattttaga