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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGAGTATGGACTTAATAGAGTCGCATGTACTCTACCCCGCATCTATCAGgtttggaaatgatatctcttgaggatctgatttcatattattctcaaagtttcattgagctctgacttgttagaaatgtttgtctag

Basic information

species Arabidopsis thaliana
transcript AT5G50950.2
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116422670|gb|EG465262.1|EG465262
EST:     TTGAGTATGGACTTAATAGAGTCGCATGTACTCTACCCCGCATCTATCAG                         CTTGCACAAGGTGGAACTGCTGTTGGGACCGGATTAAACACTAAGAAAGG
genomic: TTGAGTATGGACTTAATAGAGTCGCATGTACTCTACCCCGCATCTATCAGgtttggaaat ... gtttgtctagCTTGCACAAGGTGGAACTGCTGTTGGGACCGGATTAAACACTAAGAAAGG
EST: gi|125311122|gb|EL325207.1|EL325207
EST:     TTGAGTATGGACTTAATAGAGTCGCATGTACTCTACCCCGCATCTATCAG                         CTTGCACAAGGTGGAA
genomic: TTGAGTATGGACTTAATAGAGTCGCATGTACTCTACCCCGCATCTATCAGgtttggaaat ... gtttgtctagCTTGCACAAGGTGGAA
EST: gi|116467405|gb|EG509997.1|EG509997
EST:     TTGAGTATGGACTTAATAGAGTCGCATGTACTCTACCCCGCATCTATCAG                         CTTGCACAAGGTGGAACTGCTGTTGGGACCGGATTAAACACTAAGAAAGG
genomic: TTGAGTATGGACTTAATAGAGTCGCATGTACTCTACCCCGCATCTATCAGgtttggaaat ... gtttgtctagCTTGCACAAGGTGGAACTGCTGTTGGGACCGGATTAAACACTAAGAAAGG
EST: gi|116443356|gb|EG485948.1|EG485948
EST:     TTGAGTATGGACTTAATAGAGTCGCATGTACTCTACCCCGCATCTATCAG                         CTTGCACAAGGTGGAACTGCTGTTGGGACCGGATTAAACACTAAGAAAGG
genomic: TTGAGTATGGACTTAATAGAGTCGCATGTACTCTACCCCGCATCTATCAGgtttggaaat ... gtttgtctagCTTGCACAAGGTGGAACTGCTGTTGGGACCGGATTAAACACTAAGAAAGG
EST: gi|125268428|gb|EL282513.1|EL282513
EST:     CCGCATCTATCAG                         CTTGCACAAGGTGGAACTGCTGTTGGGACCGGATTAAACACTAAGAAAGG
genomic: CCGCATCTATCAGgtttggaaat ... gtttgtctagCTTGCACAAGGTGGAACTGCTGTTGGGACCGGATTAAACACTAAGAAAGG
EST: gi|116456305|gb|EG498897.1|EG498897
EST:     TTGAGTATGGACTTAATAGAGTCGCATGTACTCTACCCCGCATCTATCAG                         CTTGCACAAGGTGGAACTGCTGTTGGGACCGGATTAAACACTAAGAAAGG
genomic: TTGAGTATGGACTTAATAGAGTCGCATGTACTCTACCCCGCATCTATCAGgtttggaaat ... gtttgtctagCTTGCACAAGGTGGAACTGCTGTTGGGACCGGATTAAACACTAAGAAAGG
EST: gi|125087477|gb|EL146591.1|EL146591
EST:     TTGAGTATGGACTTAATAGAGTCGCATGTACTCTACCCCGCATCTATCAG                         CTTGCACAAGGTGGAACTGCTGTTGGGACCGGA
genomic: TTGAGTATGGACTTAATAGAGTCGCATGTACTCTACCCCGCATCTATCAGgtttggaaat ... gtttgtctagCTTGCACAAGGTGGAACTGCTGTTGGGACCGGA
EST: gi|125026225|gb|EL098494.1|EL098494
EST:     CCCCGCATCTATCAG                         CTTGCACAAGGTGGAACTGCTGTTGGGACCGGATTAAACACTAAGAAAGG
genomic: CCCCGCATCTATCAGgtttggaaat ... gtttgtctagCTTGCACAAGGTGGAACTGCTGTTGGGACCGGATTAAACACTAAGAAAGG
EST: gi|116428316|gb|EG470908.1|EG470908
EST:     TTGAGTATGGACTTAATAGAGTCGCATGTACTCTACCCCGCATCTATCAG                         CTTGCACAAGGTGGAACTGCTGTTGGGACCGGATTAAACACTAAGAAAGG
genomic: TTGAGTATGGACTTAATAGAGTCGCATGTACTCTACCCCGCATCTATCAGgtttggaaat ... gtttgtctagCTTGCACAAGGTGGAACTGCTGTTGGGACCGGATTAAACACTAAGAAAGG