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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTAAGCGCGAAAGGAAGTGTACCCATAGGTATTGGGAAAAACTCGCACATCAAAAGGGCCATCATCGACAAAAACGCACGTATCGGTGACAATGTCAAGgttagtgtttatatttggaacacacacaggatgtttagctttgttcatacttgctctgctcttaaaatgtgtttgttgtggaccttggcacag

Basic information

species Arabidopsis thaliana
transcript AT5G48300.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G48300.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv12s0057g01480.t01 (Vitis vinifera), 5'ss of exon 8
CTTAAGCGCGAAAGGAAGTGTACCCATAGGTATTGGGAAAAACTCGCACATCAAAAGGGCCATCATCGACAAAAACGCACGTATCGGTGACAATGTCAAGgttagtgtttatatttggaacacacacaggatgttt----agctttgttca-tacttgctctgctcttaaaatgtgtttgttgtggaccttggcacag---------------------
  |||  || ||||| ||||| || || ||||| || || ||||| ||||||||||| || ||||||||||| || || || ||||| |||||||| ||||||    |||  |||       ||   |  || |||    |  || |||   |||| |   || |  ||  |||     |||||| |  ||     ||                     
TCTAATGGCAAAAGGTAGTGTTCCAATTGGTATCGGTAAGAACTCTCACATCAAAAGAGCGATCATCGACAAGAATGCTCGCATCGGGGACAATGTGAAGgttgtgattttaattaacttagcatggattatttttcatcaatttcgttttctactggtaatgttgctatgatgatgaggttgtg-attttaatttagcgaagaaatttgttatttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125244505|gb|EL258590.1|EL258590
EST:     CGACAAAAACGACACGTATCGGTGACAATGTCAAG                         ATCATAAACAGCGACAACGTGCAAGAGGCAGCGAGAGAGACTGATGGATAT
genomic: CGACAAAAACG-CACGTATCGGTGACAATGTCAAGgttagtgttt ... cttggcacagATCATAAACAGCGACAACGTGCAAGAGGCAGCGAGAGAGACTGATGGATAT
EST: gi|86075039|gb|DR370796.1|DR370796
EST:     TCAAAAGGGCCATCATCGACAAAAACGCACGTATCGGTGACAATGTCAAG                         ATCATAAACAGCGACAACGTGCAAGAGGCAGCGAGAGAGACTGATGGATAT
genomic: TCAAAAGGGCCATCATCGACAAAAACGCACGTATCGGTGACAATGTCAAGgttagtgttt ... cttggcacagATCATAAACAGCGACAACGTGCAAGAGGCAGCGAGAGAGACTGATGGATAT
EST: gi|86084119|gb|DR379878.1|DR379878
EST:     TCAAAAGGGCCATCATCGACAAAAACGCACGTATCGGTGACAATGTCAAG                         ATCATAAACAGCGACAACGTGCAAGAGGCAGCGAGAGAGACTGATGGATAT
genomic: TCAAAAGGGCCATCATCGACAAAAACGCACGTATCGGTGACAATGTCAAGgttagtgttt ... cttggcacagATCATAAACAGCGACAACGTGCAAGAGGCAGCGAGAGAGACTGATGGATAT