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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCACCGTCGTATTGTCCAGTACAAAACGGCTTATTACTCATTTTATCTCCCTgtgagtatggattctcttcttccctagtcatatttggggtcaaaaacaatcatgttattccttttgtctccatcattgcaattgtagatcccgtgacaagctgtgtttttctattcag

Basic information

species Arabidopsis thaliana
transcript AT5G47770.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G47770.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv19s0015g01010.t01 (Vitis vinifera), 5'ss of exon 7
CCACCGTCGTATTGTCCAGTACAAAACGGCTTATTACTCATTTTATCTCCCTgtgag-tatggattctcttcttccctag---tcatatttggggtcaaaaacaa-tcatgttattccttttgtctccatcattgcaattg-tagatcccgtgacaagctgtgtttttctattcag
 ||||| || ||||| ||||||||||| ||||||||||||||||| || || || || || |   ||||| ||      |   |  ||||     | |     || ||||| |  |  |||  | |   | | || | ||  | ||  |  |                        
TCACCGCCGCATTGTTCAGTACAAAACTGCTTATTACTCATTTTACCTTCCAgtaagctaagctctctctactaagaacggttttgtattccactttattgttaaatcatgctgattttttatttttttttactgaagttacttgaggctat------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125243983|gb|EL258068.1|EL258068
EST:     TTTTATCTCCCT                         GTTGCTTGTGCGTTGCTTATGGCCGGCGAAAAATTTGGAAAACCATATTGA
genomic: TTTTATCTCCCTgtgagtatgg ... ttctattcagGTTGCTTGTGCGTTGCTTATGGCCGGCG-AAAATTTGGAAAACCATATTGA
EST: gi|124765426|gb|EH855556.1|EH855556
EST:     ACCGTCGTATTGTCCAGTACAAAACGGCTTATTACTCATTTTATCTCCCT                         GTTGCTTGTGCGTTGCTTAT
genomic: ACCGTCGTATTGTCCAGTACAAAACGGCTTATTACTCATTTTATCTCCCTgtgagtatgg ... ttctattcagGTTGCTTGTGCGTTGCTTAT
EST: gi|124818779|gb|EH903645.1|EH903645
EST:     TTACTCATTTTATCTCCCT                         GTTGCTTGTGCGTTGCTTATGGCCGGCGAAAATTTGGAAAACCATATTGAT
genomic: TTACTCATTTTATCTCCCTgtgagtatgg ... ttctattcagGTTGCTTGTGCGTTGCTTATGGCCGGCGAAAATTTGGAAAACCATATTGAT
EST: gi|125072101|gb|EL136912.1|EL136912
EST:     CCGTCGTATTGTCCAGTACAAAACGGCTTATTACTCATTTTATCTCCCT                         GTTGCTTGTGCGTTGCTTATGGCCGGCGAAAATTTGGAAAACCATATTGAT
genomic: CCGTCGTATTGTCCAGTACAAAACGGCTTATTACTCATTTTATCTCCCTgtgagtatgg ... ttctattcagGTTGCTTGTGCGTTGCTTATGGCCGGCGAAAATTTGGAAAACCATATTGAT