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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTTTGCAGAATCTGATATCCGAAATTGGTGCTTCCAGGTCTTCCAAGGCCTTTCTTATATGCATCAGCGTGGATACTTCCACCGTGATCTTAAGCCAGgtaactaatagccttgagtttccaatcaacatcagcacatgtgcgatcgagatggactgttttgtatctctgtttcagggttgttcatcacagtcaatttcaattagtttgtcaataaaacatgtgtaattttttttctgacgcag

Basic information

species Arabidopsis thaliana
transcript AT5G45430.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86059416|gb|DR355173.1|DR355173
EST:     CCTTTCTTATATGCATCAGCGTGGATACTTCCACCGTGATCTTAAGCCAG                         AAAATCTATTGGTCTCGAAAGATGTCATTAAGATTGCTGATCTTGGCCTGG
genomic: CCTTTCTTATATGCATCAGCGTGGATACTTCCACCGTGATCTTAAGCCAGgtaactaata ... tctgacgcagAAAATCTATTGGTCTCGAAAGATGTCATTAAGATTGCTGATCTTGGCCTGG
EST: gi|116444408|gb|EG487000.1|EG487000
EST:     CCTTTCTTATATGCATCAGCGTGGATACTTCCACCGTGATCTTAAGCCAG                         AAAATCTATTGGTCTCGAAAGATGTCATTAAGATTGCTGATCTTGGCCTGG
genomic: CCTTTCTTATATGCATCAGCGTGGATACTTCCACCGTGATCTTAAGCCAGgtaactaata ... tctgacgcagAAAATCTATTGGTCTCGAAAGATGTCATTAAGATTGCTGATCTTGGCCTGG
EST: gi|116444419|gb|EG487011.1|EG487011
EST:     CCTTTCTTATATGCATCAGCGTGGATACTTCCACCGTGATCTTAAGCCAG                         AAAATCTATTGGTCTCGAAAGATGTCATTAAGATTGCTGATCTTGGCCTGG
genomic: CCTTTCTTATATGCATCAGCGTGGATACTTCCACCGTGATCTTAAGCCAGgtaactaata ... tctgacgcagAAAATCTATTGGTCTCGAAAGATGTCATTAAGATTGCTGATCTTGGCCTGG