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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAAGACACGCATTGAAAGAGTCATTGGATTTGTCCTAGCCATTTGGGGAATATTGTTTTACTCTCGGCTATTAAGCACAATGACAGAACAATTTCGGgtaagttcttgagataaacactactggtgaaaaatgaatgttaattggtacaagttcctgatcgctttgtctgggcag

Basic information

species Arabidopsis thaliana
transcript AT5G43745.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G43745.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA20G35310.1 (Glycine max), 5'ss of exon 7
CAAAAGACACGCATTGAAAGAGTCATTGGATTTGTCCTAGCCATTTGGGGAATATTGTTTTACTCTCGGCTATTAAGCACAATGACAGAACAATTTCGGgtaagttcttgagataaacactactggtgaaaaatgaatgttaattggtacaagttcctgatcgctttgtctgggcag
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CAAGCAACACGTGTTGAGCGTGTTATTGGCTTTCTTCTTGCAATATGGGGTATATTGTTTTACTCTCGACTTCTAAGTACGATGACTGAACAATTTAGGgtaaaatct-gaattattaagcattcattaagcaatattttctgtgcatgccattaatt--ttgagtcttcacaacag

upper sequence: AT5G43745.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv05s0020g04630.t01 (Vitis vinifera), 5'ss of exon 7
CAAAAGACACGCATTGAAAGAGTCATTGGATTTGTCCTAGCCATTTGGGGAATATTGTTTTACTCTCGGCTATTAAGCACAATGACAGAACAATTTCGGgtaagttcttgagataaaca-ctactggtgaaaaatgaatgttaattggtacaagttcctgatcgctttgtctgggcag
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CAAAGAACACATATTGGACGTGTTATTGGCTTTGTTCTTGCTATATGGGGCATATTGTTTTACTCCCGCCTATTGAGTACAATGACAGAACAATTCAGAgtaagctcttgaaaagagaagcttttactaaagtttataggtatgttcatttacctccttatgaccatcatttggacag