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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATAAGGTTAGCTTCAAGATGCTTGCAATATGAACCCCGAGAGCGGCCTAACCCAAAATCTTTAGTCTCTGCAATGATTCCTCTTCAGAAAGATCTTGAGgtgcttttcactatcattaaccagttccgttttgcttataattagcaagcttttattattaatgatgaatattgaatcgcagaagcttatatctttctgt...

Basic information

species Arabidopsis thaliana
transcript AT5G41260.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G41260.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv02s0025g03550.t01 (Vitis vinifera), 5'ss of exon 9
AATAAGGTTAGCTTCAAGATGCTTGCAATATGAACCCCGAGAGCGGCCTAACCCAAAATCTTTAGTCTCTGCAATGATTCCTCTTCAGAAAGATCTTGAGgtgcttttcactatcattaaccagttccgttttgcttataattagcaagcttttattattaatgatgaatattgaatcgcagaagcttatatctttctgt-------
| |  | ||||| ||| |||| || |||||||| |||||||||||||| || ||||| || |||||  ||||  | |||||||||||||| ||   ||||||   |||       ||| ||  | |  | | |   ||     |   || | || ||| |         |  |   |         |   | |||| | |       
AGTGCGTTTAGCATCACGATGTTTACAATATGAGCCCCGAGAGCGGCCCAATCCAAAGTCATTAGTTGCTGCTTTAATTCCTCTTCAGAAGGAAACTGAGgttagttt-------attgactggctgagctctaagtagggggatggagttgtttttagtgtattcctctgctttgttttgtcctttggcacctttttatacaccat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86059170|gb|DR354927.1|DR354927
EST:     ACCCAAAATCTTTAGTCTCTGCAATGATTCCTCTTCAGAAAGATCTTGAG                         ATTGCTTCTCATCAATTGTTGGGCGTACCTAACAGTGCCACAACGACAGCT
genomic: ACCCAAAATCTTTAGTCTCTGCAATGATTCCTCTTCAGAAAGATCTTGAGgtgcttttca ... aatcatgtagATTGCTTCTCATCAATTGTTGGGCGTACCTAACAGTGCCACAACGACAGCT
EST: gi|19877578|gb|AU238409.1|AU238409
EST:     ACCCAAAATCTTTAGTCTCTGCAATGATTCCTCTTCAGAAAGATCTTGAG                         ATTGCTTCTCATCAATTGTTGGGCGTACCTAACAGTGCCACAACGACAGCT
genomic: ACCCAAAATCTTTAGTCTCTGCAATGATTCCTCTTCAGAAAGATCTTGAGgtgcttttca ... aatcatgtagATTGCTTCTCATCAATTGTTGGGCGTACCTAACAGTGCCACAACGACAGCT
EST: gi|86059169|gb|DR354926.1|DR354926
EST:     ACCCAAAATCTTTAGTCTCTGCAATGATTCCTCTTCAGAAAGATCTTGAG                         ATTGCTTCTCATCAATTGTTGGGCGTACCTAACAGTGCCACAACGACAGCT
genomic: ACCCAAAATCTTTAGTCTCTGCAATGATTCCTCTTCAGAAAGATCTTGAGgtgcttttca ... aatcatgtagATTGCTTCTCATCAATTGTTGGGCGTACCTAACAGTGCCACAACGACAGCT