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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCCTGAACTGGATTTTGAGATTCCACCAGAGGCCCAAAGTGGTAGTTTATCTACGgtaagtcctcttaaccatcttgtgatacaaactgttcatttttagggggtagttgtttctttgaacaacctaaaaatcttctggtctattcatgacaaaa...

Basic information

species Arabidopsis thaliana
transcript AT5G37340.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G37340.3 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA07G34890.1 (Glycine max), 5'ss of exon 6
ATTCCTGAACTGGATTTTGAGATTCCACCAGAGGCCCAAAGTGGTAGTTTATCTACGgtaagtcctcttaaccatcttgtgatacaaactgttcatttttagggggtagttgtttctttgaacaacctaa--aaatcttctggtctattcatgacaaaa---
|| |||||||||||||||||||||||||||||||| ||  |||||||| | || ||||||   | ||| |  ||| ||   ||  |   ||||| |||        |||    ||    |     | |    || | || |   | |   | |     |   
ATACCTGAACTGGATTTTGAGATTCCACCAGAGGCTCAGCGTGGTAGTCTGTCAACGgta---cttctgatacatatttcaatttactttgttcttttcccattcctagca--ttgacaggtttgcttggtcaatttttttcccccaggtaggggtttacct

upper sequence: AT5G37340.3 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA20G02690.1 (Glycine max), 5'ss of exon 6
ATTCCTGAACTGGATTTTGAGATTCCACCAGAGGCCCAAAGTGGTAGTTTATCTACGgtaagtcctcttaaccatcttgtgatacaaactgttcatttttagggggtagttgtttctttgaacaacctaaaaatcttctggtctattcatgacaaaa----
|| || |||||||||||||||||||||||||| || ||| |||||||| | || ||||||   | ||| |  ||| ||   ||  |   ||||| ||| |      |||   ||     |     | |    |  ||    | | | |  |  |       
ATACCAGAACTGGATTTTGAGATTCCACCAGAAGCTCAACGTGGTAGTCTGTCAACGgta---cttctgatacatatttcaatttactttgttcttttctcattcctagc-attgacaggttttgcttggtcaattttatttttttcccgggtagggcagg