1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AAGTTTTCCCAGAAGTAGTGAGGTCGCTCTATGAACTCGATGTCCTCGCTGAAGACACCATTCTCCACTGGTTCCGTAAAGGAACCAACTCAAAGGGCAGgtgtgcatttagttccatgacatattataacaacttcattacgaaagcttttcttttatatcatagctaaaaagtatgaaagcactctcttgatgttttcttgtggtgaatgtttgcag
species | Arabidopsis thaliana |
transcript | AT5G36230.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GAAGACACCATTCTCCACTGGTTCCGTAAAGGAACCAACTCAAAGGGCAG GCAAACCTTTGTGAAAAGTTTAGAGCCATTTGTGEST: gi|164094723|gb|ES115910.1|ES115910
genomic: GAAGACACCATTCTCCACTGGTTCCGTAAAGGAACCAACTCAAAGGGCAGgtgtgcattt ... atgtttgcagGCAAACCTTTGTGAAAAGTTTAGAGCCATTTGTG
EST: CACCATTCTCCACTGGTTCCGTAAAGGAACCAACTCAAAGGGCAG GCAAACCTTTGTGAAAAGTTTAGAGCCATTTGTGAATTGGCTTGAAGAGGCEST: gi|125051831|gb|EL123898.1|EL123898
genomic: CACCATTCTCCACTGGTTCCGTAAAGGAACCAACTCAAAGGGCAGgtgtgcattt ... atgtttgcagGCAAACCTTTGTGAAAAGTTTAGAGCCATTTGTGAATTGGCTTGAAGAGGC
EST: GAAGACACCATTCTCCACTGGTTCCGTAAAGGAACCAACTCAAAGGGCAG GCAAACCTTTGTGAAEST: gi|125090932|gb|EL148755.1|EL148755
genomic: GAAGACACCATTCTCCACTGGTTCCGTAAAGGAACCAACTCAAAGGGCAGgtgtgcattt ... atgtttgcagGCAAACCTTTGTGAA
EST: GAAGACACCATTCTCCACTGGTTCCGTAAAGGAACCAACTCAAAGGGCAG GCAAACCTTTGTGAAAAGTTTAG
genomic: GAAGACACCATTCTCCACTGGTTCCGTAAAGGAACCAACTCAAAGGGCAGgtgtgcattt ... atgtttgcagGCAAACCTTTGTGAAAAGTTTAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGTTTTCCCAGAAGTAGTGAGGTCGCTCTATGAACTCGATGTCCTCGCTGAAGACACCATTCTCCACTGGTTCCGTAAAGGAACCAACTCAAAGGGCAGgtgtgcatttagttccatgacatattataacaacttcattacgaaagcttttcttttatatcatagctaaaaagtatgaaagcactctcttgatgttttcttgtggtgaatgtttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA