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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGGATACGGATCACGATTTCCTGATTGACAAAGAAAATCTTATGAGATATGGAAACCATGCTCTTACCTACCGGATTGTCGACAGAATATTCTCCCAGgttctgtctaaaaaatctttctacttgaggattttgtttatattgcttccatttaagagttctgtcctcgttcaaagttattattactcttaagaggactgtcatcatggataatgcattggtttctacttag

Basic information

species Arabidopsis thaliana
transcript AT5G28850.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G28850.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA10G30930.1 (Glycine max), 5'ss of exon 8
GCTGGATACGGATCACGATTTCCTGATTGACAAAGAAAATCTTATGAGATATGGAAACCATGCTCTTACCTACCGGATTGTCGACAGAATATTCTCCCAGgttctgtctaaaaaatctttctacttgaggatttt-gtttatattgcttcc-atttaagagttctgtcctcgttcaaagttattattactcttaagaggactgtcatcatggataatgcattggtttctacttag------------------------------------------------
||||||||| |||||||||||| | || |||||||| |||||||| |||||||| |||||||| |||||||| || ||||| || |||||||| || |||||| ||| |  |  | |||  | |||  |  |||  | ||  | || |||  | || ||        |||    |    || ||  ||     |  ||   |    |||  |   || ||||  ||| ||                                                     
GCTGGATACAGATCACGATTTCTTAATAGACAAAGAGAATCTTATCAGATATGGTAACCATGCGCTTACCTATCGAATTGTTGATAGAATATTTTCTCAGgtt-tgtgtggatta-cttgttgcttctgtctttgagatttaactgtttctgacttcagcaacagaccctataccccttttctttctaacgcaagaagtgtttggttcagtgtccattcatttttttttatcagatcattttatagaagatgcagattctgacttgctttattattgtctcag

upper sequence: AT5G28850.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA20G36530.1 (Glycine max), 5'ss of exon 8
GCTGGATACGGATCACGATTTCCTGATTGACAAAGAAAATCTTATGAGATATGGAAACCATGCTCTTACCTACCGGATTGTCGACAGAATATTCTCCCAGgttctgtctaaaaaatctttctacttgaggattttg--tttatattgcttccatttaagagttctgtcctcgttcaaagttattattactcttaagaggactgtcatcatggataatgcattggtttctacttag----------------------------------------------
||||||||| |||||||||||| | || |||||||| |||||||| |||||||| |||||||| |||||||| || ||||| || |||||||| || |||||| ||| |  |  | |||  | |||  |  |||    |||| ||   |   | || ||        |||    |     | ||  ||     |  ||   |    |||  |   || || |  | | ||                                                   
GCTGGATACAGATCACGATTTCTTTATAGACAAAGAGAATCTTATCAGATATGGTAACCATGCGCTTACCTATCGAATTGTTGATAGAATATTTTCTCAGgtt-tgtgtggatta-cttgttgcttctgtctttgagatttaaatgtttatgacttcagcaacagaccctataccccttctctttctaacgcaagaagtgtttggttcagtgtccatccacttttgtttatcagatcatttattgaagtgcagattctgacttgcttcagtattgtctcag