1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TGAGAAAATTGAACAGTTTTGCATCACCGGCCCTAACGAGAATGCCTCGTGGGAAATGCTCGATGAGATGATGAAGAACTCTGAAGATTTTTACCAAGCGgtaatctcgataccttaagttaagaaaccttatacattttaatagtttctaaatagtcaactgtgtggtttctctgcag
species | Arabidopsis thaliana |
transcript | AT5G27470.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GGGAAATGCTCGATGAGATGATGAAGAACTCTGAAGATTTTTACCAAGCG CTAAAACTTCCAEST: gi|86059857|gb|DR355614.1|DR355614
genomic: GGGAAATGCTCGATGAGATGATGAAGAACTCTGAAGATTTTTACCAAGCGgtaatctcga ... ttctctgcagCTAAAACTTCCA
EST: GGGAAATGCTCGATGAGATGATGAAGAACTCTGAAGATTTTTACCAAGCG CTAAAACTTCCATACCAAATCGTCTCGATCGTCTCTGGAGCATTGAATGATEST: gi|47831831|gb|CK121515.1|CK121515
genomic: GGGAAATGCTCGATGAGATGATGAAGAACTCTGAAGATTTTTACCAAGCGgtaatctcga ... ttctctgcagCTAAAACTTCCATACCAAATCGTCTCGATCGTCTCTGGAGCATTGAATGAT
EST: GGGAAATGCTCGATGAGATGATGAAGAACTCTGAAGATTTTTACCAAGCG CTAAAACTTCCATACCAAATCGTCTCGATCGTCTCTGGAGCATTGAATGAT
genomic: GGGAAATGCTCGATGAGATGATGAAGAACTCTGAAGATTTTTACCAAGCGgtaatctcga ... ttctctgcagCTAAAACTTCCATACCAAATCGTCTCGATCGTCTCTGGAGCATTGAATGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAGAAAATTGAACAGTTTTGCATCACCGGCCCTAACGAGAATGCCTCGTGGGAAATGCTCGATGAGATGATGAAGAACTCTGAAGATTTTTACCAAGCGgtaatctcgataccttaagttaagaaaccttatacattttaatagtttctaaatagtcaactgtgtggtttctctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA