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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGACACGAAGAAAATATCGGCTGTATCCATCTTTTTTGAGACAATGCCATACAGATTGGATGAGAACACTGGTTACATTGATTATGACCAGgttggttagttcatagccagcttagcttaatgcttcaacattctatctttatccaatataccattgagatatgggtttaatacatacaagcttttcgtttacggttcttatgttaagtaattgaacagtttttaaaccaaagtttatttatttgtgatacaataatttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G26780.3
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G26780.3 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os03g52840.2 (Oryza sativa), 5'ss of exon 7
ACTGACACGAAGAAAATATCGGCTGTATCCATCTTTTTTGAGACAATGCCATACAGATTGGATGAGAACACTGGTTACATTGATTATGACCAGgttggttag--ttcatagccagcttagcttaatgc--ttcaacattctatctttatccaatataccattg-agatatgggtttaatacatacaagcttttcgtttacggttcttatgttaagtaattgaacagtttttaaaccaaagtttatttatttgtgatacaataatttgcag
||||| || ||||| || || || || || || || |||||||||||||| |||||||||||||| | |||||| |  ||||||||||| |||||    |    | | || |    ||   |||||||  || ||| |  |   ||  || |  || |  ||  || |||| ||||       ||||    |                                                                              
ACTGATACTAAGAAGATTTCAGCAGTTTCGATATTCTTTGAGACAATGCCCTACAGATTGGATGAAAGCACTGGCTTGATTGATTATGATCAGgtgcaatgtcctccttatctgttttgttttaatgccatttaacttattgaattc-tctatcattcttttataggtatgagttttcattggacaaaacgtgt----------------------------------------------------------------------------

upper sequence: AT5G26780.3 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G135283_T03 (Zea mays), 5'ss of exon 7
ACTGACACGAAGAAAATATCGGCTGTATCCATCTTTTTTGAGACAATGCCATACAGATTGGATGAGAACACTGGTTACATTGATTATGACCAGgttggttagttcatagccagcttagcttaatgcttcaacattctatctttatc---caatataccattgagatatgggtttaatacatacaagcttttcgtttacggttcttatgttaagtaattgaacagtttttaaaccaaagtttatttatttgtgatacaataatttgcag
|||||||| ||||| ||||| ||    || || ||||||||||||||||| |||||||||||||| | |||||| |  |||||||| || |||||   ||   || |  ||    ||| |||  | | || |||  ||    |  |   |||||     |||   | ||  ||| |  || | ||       |   | ||||                                                                  
ACTGACACTAAGAAGATATCTGCAACTTCAATATTTTTTGAGACAATGCCTTACAGATTGGATGAAAGCACTGGATTGATTGATTACGATCAGgtcattt---tcctccccgttctagtttatagataca-catattaagcatggcgagcaataatttgttgttttttgcattttagccaaaaaaaa-----gagaagggtt------------------------------------------------------------------

upper sequence: AT5G26780.3 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA02G38160.2 (Glycine max), 5'ss of exon 7
ACTGACACGAAGAAAATATCGGCTGTATCCATCTTTTTTGAGACAATGCCATACAGATTGGATGAGAACACTGGTTACATTGATTATGACCAGgttggttagttcatagccagcttagcttaatgcttcaacattctatctttatccaatataccattgagatatgggtttaatacatacaagcttttcgtttacggttcttatgttaagtaattgaacagtttttaaaccaaagtttatttatttgtgatacaataatttgcag
|||||||| ||||| ||||| |||||||| || |||||||| |||||||||||||||||| |||||| ||||||||| || |||||||||||||| |||  ||      |||   ||   |      |  | |||   ||||     |  | | | || |   |   ||   |    | | |  |||  ||     |   |||                                                              
ACTGACACCAAGAAGATATCAGCTGTATCTATATTTTTTGAAACAATGCCATACAGATTGAATGAGAGCACTGGTTATATCGATTATGACCAGgtaggtaggt-----accattgtattctgtgttgtggatatttcttcttatcaaagaaaatcttttaagca---gtcagactgtttcta--tttcagtcagtagagatta--------------------------------------------------------------

upper sequence: AT5G26780.3 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA14G36280.1 (Glycine max), 5'ss of exon 7
ACTGACACGAAGAAAATATCGGCTGTATCCATCTTTTTTGAGACAATGCCATACAGATTGGATGAGAACACTGGTTACATTGATTATGACCAGgttggttagttcatagccagcttagcttaatgcttcaacattctatctttatccaatata--ccattgagatatgggtttaatacatacaagcttttcgtttacggttcttatgttaagtaattgaacagtttttaaaccaaagtttatttatttgtgatacaataatttgcag
|||||||| ||||| |||||||||||||| || || ||||| |||||||||||||||||| |||||| ||||||||| || |||||||||||||| |||  ||      |||   ||   |      |  | ||||| |||| ||| || | |  |  || ||   | ||  |  | |        ||   ||| || |                                                                    
ACTGACACCAAGAAGATATCGGCTGTATCTATATTCTTTGAAACAATGCCATACAGATTGAATGAGAGCACTGGTTATATCGATTATGACCAGgtaggtaggt-----accattgtattctgtgttgtggatattctttctt-atcaaagagaatcttttaagcagtcggactgtttctatttcagttgctgttcactg--------------------------------------------------------------------

upper sequence: AT5G26780.3 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv18s0001g07960.t01 (Vitis vinifera), 5'ss of exon 7
ACTGACACGAAGAAAATATCGGCTGTATCCATCTTTTTTGAGACAATGCCATACAGATTGGATGAGAACACTGGTTACATTGATTATGACCAGgttggttagttcatagccagcttagcttaatgcttcaacattctatctttatccaatataccattgagatatgggtttaatacatacaagcttttcgt-ttacggttcttatgttaagtaattgaacagtttttaaaccaaagtttatttatttgtgatacaataatttgcag
|| ||||| ||||| ||||| ||||| || || |||||||||||||||||||||||||||||||| || ||||| || ||||| |||||||||||   ||  | |||  |   ||     |    ||    |  ||| ||| |||| |     | || ||  |     |  |||  || |||   |    |  |||  || |||                                                              
ACCGACACCAAGAAGATATCTGCTGTGTCTATATTTTTTGAGACAATGCCATACAGATTGGATGAAAAAACTGGATATATTGACTATGACCAGgtgcatt--tacatctctctctctctct----ctctctctctctctctctatcta----tctatggaagttc--ttccaattgatgcaaatatggtatgctaccatttttag-------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164132738|gb|ES016421.1|ES016421
EST:     TTGGATGAGAACACTGGTTACATTGATTATGACCAG                         CTAGAAAAGAGTGCCGTGCTTTTCAGACCGAAACTTATTGTTGCGGGTGCA
genomic: TTGGATGAGAACACTGGTTACATTGATTATGACCAGgttggttagt ... taatttgcagCTAGAAAAGAGTGCCGTGCTTTTCAGACCGAAACTTATTGTTGCGGGTGCA
EST: gi|164152189|gb|EL994062.1|EL994062
EST:     TTGGATGAGAACACTGGTTACATTGATTATGACCAG                         CTAGAAAAGNGTGCCGTGCTTTTCAGACCGAAACTTATTGTTGCGGGTGCA
genomic: TTGGATGAGAACACTGGTTACATTGATTATGACCAGgttggttagt ... taatttgcagCTAGAAAAGAGTGCCGTGCTTTTCAGACCGAAACTTATTGTTGCGGGTGCA