1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TTCTGCACCGGCTAAGACCACGGTTGCACCACTTGCTGTCCAAGATCAGCGAAAAACATTGAAGTTTGGCTTCTCTTCTAAAAGCGGCATTATATCAAAGgtatggaaactcactattacaggccaagcctagtatagccgggcttaaagcaggccagtacgggttagcctgctttaacctcccgtactcagtcatcactgaaactagttatctctttcatctttacag
species | Arabidopsis thaliana |
transcript | AT5G26610.3 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GAAAAACATTGAAGTTTGGCTTCTCTTCTAAAAGCGGCATTATATCAAAG AGCCAACCCACAAGCAGCATCAAGAAGCCGAAAGTAGCAATCGCGTCCGTTEST: gi|116485269|gb|EG527861.1|EG527861
genomic: GAAAAACATTGAAGTTTGGCTTCTCTTCTAAAAGCGGCATTATATCAAAGgtatggaaac ... atctttacagAGCCAACCCACAAGCAGCATCAAGAAGCCGAAAGTAGCAATCGCGTCCGTT
EST: GAAAAACATTGAAGTTTGGCTTCTCTTCTAAAAGCGGCATTATATCAAAG AGCCAACCCACAAGCAGCATCAAGAAGCCGAAAGTAGCAATCGCGTCCGTTEST: gi|116485278|gb|EG527870.1|EG527870
genomic: GAAAAACATTGAAGTTTGGCTTCTCTTCTAAAAGCGGCATTATATCAAAGgtatggaaac ... atctttacagAGCCAACCCACAAGCAGCATCAAGAAGCCGAAAGTAGCAATCGCGTCCGTT
EST: GAAAAACATTGAAGTTTGGCTTCTCTTCTAAAAGCGGCATTATATCAAAG AGCCAACCCACAAGCAGCATCAAGAAGCCGAAAGTGGCAATCGCGTCCGTTEST: gi|164007793|gb|ES107333.1|ES107333
genomic: GAAAAACATTGAAGTTTGGCTTCTCTTCTAAAAGCGGCATTATATCAAAGgtatggaaac ... atctttacagAGCCAACCCACAAGCAGCATCAAGAAGCCGAAAGTAGCAATCGCGTCCGTT
EST: AAAAACATTGAAGTTTGGCTTCTCTTCTAAAAGACGGCATTATATCAAAG AGCCAACCCACAAGEST: gi|164000355|gb|ES125314.1|ES125314
genomic: AAAAACATTGAAGTTTGGCTTCTCTTCTAAAAG-CGGCATTATATCAAAGgtatggaaac ... atctttacagAGCCAACCCACAAG
EST: AAAAACATTGAAGTTTGGTCTTCTCTTCTAAAAGCGGCATTATATCAAAG AGCCAACCCACAAG
genomic: AAAAACATTGAAGTTTGG-CTTCTCTTCTAAAAGCGGCATTATATCAAAGgtatggaaac ... atctttacagAGCCAACCCACAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCTGCACCGGCTAAGACCACGGTTGCACCACTTGCTGTCCAAGATCAGCGAAAAACATTGAAGTTTGGCTTCTCTTCTAAAAGCGGCATTATATCAAAGgtatggaaactcactattacaggccaagcctagtatagccgggcttaaagcaggccagtacgggttagcctgctttaacctcccgtactcagtcatcactgaaactagttatctctttcatctttacag
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