1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AGATTGGACCTGTGATGATAACTAGATGGTTTCTACCATATGATGACACTCTAGAGAGCAAACAAGCAACTTGGAGGGCCAAAGAATTCTTCTTGGGATGgtatatatcaatatccaaaaataaaatgatttttttttttataaatgaaatgattttaaaaattaatatgtaaattaataaaaatatgtatgtacgtacatcag
species | Arabidopsis thaliana |
transcript | AT5G25980.3 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TTGGAGGGCCAAAGAATTCTTCTTGGGATG GTTCATGGAGCCGCTAACAAAGGGTAAATACCCATAACATCATGAGGAAACEST: gi|116446415|gb|EG489007.1|EG489007
genomic: TTGGAGGGCCAAAGAATTCTTCTTGGGATGgtatatatca ... cgtacatcagGTTCATGGAGCCGCTAACAAAGGGTAAATACCCATA-CATCATGAGGAAAC
EST: CTAGAGAGCAAACAAGCAACTTGGAGGGCCAAAGAATTCTTCTTGGGATG GTTCATGGAGCCGCTAACAAAGGGTAAATACCCATACATCATGAGGAAACTEST: gi|124722159|gb|EH813561.1|EH813561
genomic: CTAGAGAGCAAACAAGCAACTTGGAGGGCCAAAGAATTCTTCTTGGGATGgtatatatca ... cgtacatcagGTTCATGGAGCCGCTAACAAAGGGTAAATACCCATACATCATGAGGAAACT
EST: TTGGAGGGCCAAAGAATTCTTCTTGGGATG GTTCATGGAGCCGCTAACAAAGGGTAAATACCCATACATCATGAGGAAACTEST: gi|116477703|gb|EG520295.1|EG520295
genomic: TTGGAGGGCCAAAGAATTCTTCTTGGGATGgtatatatca ... cgtacatcagGTTCATGGAGCCGCTAACAAAGGGTAAATACCCATACATCATGAGGAAACT
EST: CTAGAGAGCAAACAAGCAACTTGGAGGGCCAAAGAATTCTTCTTGGGATG GTTCGTGGAGCCGCTAACAAAGGGTAAATACCCATACATCATGAGGAAACTEST: gi|116446282|gb|EG488874.1|EG488874
genomic: CTAGAGAGCAAACAAGCAACTTGGAGGGCCAAAGAATTCTTCTTGGGATGgtatatatca ... cgtacatcagGTTCATGGAGCCGCTAACAAAGGGTAAATACCCATACATCATGAGGAAACT
EST: CTAGAGAGCAAACAAGCAACTTGGAGGGCCAAAGAATTCTTCTTGGGATG GTTCATGGAGCCGCTAACAAAGGGTAAATACCCATACATCATGAGGAAACTEST: gi|116410415|gb|EG453007.1|EG453007
genomic: CTAGAGAGCAAACAAGCAACTTGGAGGGCCAAAGAATTCTTCTTGGGATGgtatatatca ... cgtacatcagGTTCATGGAGCCGCTAACAAAGGGTAAATACCCATACATCATGAGGAAACT
EST: CTAGAGAGCAAACAAGCAACTTGGAGGGCCAAAGAATTCTTCTTGGGATG GTTCATGGAGCCGCTAACAAAGGGTAAATACCCATACATCATGAGGAAACTEST: gi|116439048|gb|EG481640.1|EG481640
genomic: CTAGAGAGCAAACAAGCAACTTGGAGGGCCAAAGAATTCTTCTTGGGATGgtatatatca ... cgtacatcagGTTCATGGAGCCGCTAACAAAGGGTAAATACCCATACATCATGAGGAAACT
EST: CTAGAGAGCAAACAAGCAACTTGGAGGGCCAAAGAATTCTTCTTGGGATG GTTCATGGAGCCGCTAACAAAGGGTAAATACCCATACATCATGAGGAAACTEST: gi|116439115|gb|EG481707.1|EG481707
genomic: CTAGAGAGCAAACAAGCAACTTGGAGGGCCAAAGAATTCTTCTTGGGATGgtatatatca ... cgtacatcagGTTCATGGAGCCGCTAACAAAGGGTAAATACCCATACATCATGAGGAAACT
EST: CTAGAGAGCAAACAAGCAACTTGGAGGGCCAAAGAATTCTTCTTGGGATG GTTCATGGAGCCGCTAACAAAGGGTAAATACCCATACATCATGAGGAAACTEST: gi|116447714|gb|EG490306.1|EG490306
genomic: CTAGAGAGCAAACAAGCAACTTGGAGGGCCAAAGAATTCTTCTTGGGATGgtatatatca ... cgtacatcagGTTCATGGAGCCGCTAACAAAGGGTAAATACCCATACATCATGAGGAAACT
EST: CTAGAGAGCAAACAAGCAACTTGGAGGGCCAAAGAATTCTTCTTGGGATG GTTCATGGAGCCGCTAACAAAGGGTAAATACCCATACATCATGAGGAAACTEST: gi|116446304|gb|EG488896.1|EG488896
genomic: CTAGAGAGCAAACAAGCAACTTGGAGGGCCAAAGAATTCTTCTTGGGATGgtatatatca ... cgtacatcagGTTCATGGAGCCGCTAACAAAGGGTAAATACCCATACATCATGAGGAAACT
EST: CTAGAGAGCAAACAAGCAACTTGGAGGGCCAAAGAATTCTTCTTGGGATG GTTCATGGAGCCGCTAACAAAGGGTAAATACCCATACATCATGAGGAAACTEST: gi|125128442|gb|EL172764.1|EL172764
genomic: CTAGAGAGCAAACAAGCAACTTGGAGGGCCAAAGAATTCTTCTTGGGATGgtatatatca ... cgtacatcagGTTCATGGAGCCGCTAACAAAGGGTAAATACCCATACATCATGAGGAAACT
EST: CTAGAGAGCAAACAAGCAACTTGGAGGGCCAAAGAATTCTTCTTGGGATG GTTCATGGAGCEST: gi|116410418|gb|EG453010.1|EG453010
genomic: CTAGAGAGCAAACAAGCAACTTGGAGGGCCAAAGAATTCTTCTTGGGATGgtatatatca ... cgtacatcagGTTCATGGAGC
EST: CTAGAGAGCAAACAAGCAACTTGGAGGGCCAAAGAATTCTTCTTGGGATG GTTCATGGAGCCGCTAACAAAGGGTAAATACCCATACATCATGAGGAAACT
genomic: CTAGAGAGCAAACAAGCAACTTGGAGGGCCAAAGAATTCTTCTTGGGATGgtatatatca ... cgtacatcagGTTCATGGAGCCGCTAACAAAGGGTAAATACCCATACATCATGAGGAAACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGATTGGACCTGTGATGATAACTAGATGGTTTCTACCATATGATGACACTCTAGAGAGCAAACAAGCAACTTGGAGGGCCAAAGAATTCTTCTTGGGATGgtatatatcaatatccaaaaataaaatgatttttttttttataaatgaaatgattttaaaaattaatatgtaaattaataaaaatatgtatgtacgtacatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA