1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
ACCATGGAAGAAAATTATTGTTGTTGTTGAAGGTATTTACAGCATGGAAGGGGAGATTTGTCATCTACCGGAAGTTGTGGCCATATGCAAGAAGTATAAGgtgagacaatattcctgaattactgattatgagaattggttgataactgaaactattttgtgtgtgcaaataccccttaaaaagtaactgggttcactat...
species | Arabidopsis thaliana |
transcript | AT5G23670.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TACCGGAAGTTGTGGCCATATGCAAGAAGTATAAG GCATATGTTTATTTGGATGAAGCTCACAGCATTGGGGCAATTGGTAAAACAEST: gi|86059362|gb|DR355119.1|DR355119
genomic: TACCGGAAGTTGTGGCCATATGCAAGAAGTATAAGgtgagacaat ... ttcgtttcagGCATATGTTTATTTGGATGAAGCTCACAGCATTGGGGCAATTGGTAAAACA
EST: GGGAGATTTGTCATCTACCGGAAGTTGTGGCCATATGCAAGAAGTATAAG GCATATGTTTATTTGGATGAAGCTCACAGCATTGGGGCAATTGGTAAAACAEST: gi|124807402|gb|EH893806.1|EH893806
genomic: GGGAGATTTGTCATCTACCGGAAGTTGTGGCCATATGCAAGAAGTATAAGgtgagacaat ... ttcgtttcagGCATATGTTTATTTGGATGAAGCTCACAGCATTGGGGCAATTGGTAAAACA
EST: CAAGAAGTATAAG GCATATGTTTATTTGGATGAAGCTCACAGCATTGGGGCAATTGGTAAAACAEST: gi|124918154|gb|EH992020.1|EH992020
genomic: CAAGAAGTATAAGgtgagacaat ... ttcgtttcagGCATATGTTTATTTGGATGAAGCTCACAGCATTGGGGCAATTGGTAAAACA
EST: GGGAGATTTGTCATCTACCGGAAGTTGTGGCCATATGCAAGAAGTATAAG GCATATGTTTATTTGGATGAAGCTCACAGC
genomic: GGGAGATTTGTCATCTACCGGAAGTTGTGGCCATATGCAAGAAGTATAAGgtgagacaat ... ttcgtttcagGCATATGTTTATTTGGATGAAGCTCACAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCATGGAAGAAAATTATTGTTGTTGTTGAAGGTATTTACAGCATGGAAGGGGAGATTTGTCATCTACCGGAAGTTGTGGCCATATGCAAGAAGTATAAGgtgagacaatattcctgaattactgattatgagaattggttgataactgaaactattttgtgtgtgcaaataccccttaaaaagtaactgggttcactat
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT