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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTCGGAGACATATTTCCTCCAGTTAGCTTGAACTTTGCTGGTGGAGCATCTATGTTCTTGAATCCTCAGGATTACCTCATACAGCAGAACAATGTCgtaagcactttaactcgcaaccttttcataggaacctggtttcagaatctgaacctaccttgacctgaaacagtgagtttttttttttctgttcctggtataacattggcctctgcactctgctttctag

Basic information

species Arabidopsis thaliana
transcript AT5G22850.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G22850.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA17G05490.1 (Glycine max), 5'ss of exon 7
TGTCGGAGACATATTTCCTCCAGTTAGCTTGAACTTTGCTGGTGGAGCATCTATGTTCTTGAATCCTCAGGATTACCTCATACAGCAGAACAATGTCgtaagcactttaactcgcaaccttttcataggaacctggtttcagaatctgaacctaccttgacctgaaacagtgagtttttttttttctgttcctggta--taacattggcctctgcactctgctttctag
||||   ||  | ||||||| ||| ||  |||||||||||||||| ||||||||| | || |  |||||||| ||||| |||||||||||     | ||||| | |  ||||   |   |||||  ||||  || || |      ||  |  |       ||  | | | ||| ||||    |    ||   | | |  | ||| |||                     
TGTCACTGAAGTTTTTCCTCAAGTAAGTCTGAACTTTGCTGGTGGTGCATCTATGATTTTAAGGCCTCAGGACTACCTGATACAGCAGAATTCCATTgtaagtattcaaactttaa---ttttctgagga--ctagtctggattcctagattt-------ccaaagatattgatttttcaagtcaaagtgagttgcaattgacaatggt--------------------

upper sequence: AT5G22850.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv06s0061g01030.t01 (Vitis vinifera), 5'ss of exon 7
TGTCGGAGACATATTTCCTCCAGTTAGCTTGAACTTTGCTGGTGGAGCATCTATGTTCTTGAATCCTCAGGATTACCTCATACAGCAGAACAATGTCgtaagcactttaactcgcaaccttttcataggaacctggtttcagaatctgaacctaccttgacctgaaacagtgagtttttttttttctgttcctggtataacattggcctctgcactctgctttctag
||||   |  ||||||||| |||| || ||||||||||||||||| | |||||||    | || ||| |||| |||||  ||||||||||     | || ||   |||||||  |||  ||||| |          ||| |   |    |  |   |||            ||  | |||| ||| | ||     ||  |  |  || |  |               
TGTCAAGGGTATATTTCCTACAGTCAGTTTGAACTTTGCTGGTGGTGTATCTATGAATCTAAAACCTGAGGACTACCTTCTACAGCAGAATTCCATTgtgagatgtttaactt-caattttttctt-------ctctttaaccgttaagagttcatttg------------gatatcttttgtttgtattgaaattaagagctgagcttgggaggag----------