1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CTTGTTGAAGATTGCGATGACTACTTTATGTTCCAAAATTCTCTCACAGGACAAGGAACATTTTGCAGAAATGGCCGTGGATGCTGTTTTCAGGCTAAAGgttccatttcttcctccttttgaaactgattcagcaatgtcatgtgttccttccttctttttctcttgatttatgtgttatctcatgaaagaagatcttc...
species | Arabidopsis thaliana |
transcript | AT5G20890.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AATGGCCGTGGATGCTGTTTTCAGGCTTAAAG GGAAGCACAAACTTGGAAGCTATTCAGATCATCAAAAAACCTGGAGGGTCEST: gi|116444514|gb|EG487106.1|EG487106
genomic: AATGGCCGTGGATGCTGTTTTCAGGC-TAAAGgttccatttc ... cgttcaacagGGAAGCACAAACTTGGAAGCTATTCAGATCATCAAAAAACCTGGAGGGTC
EST: ACAAGGAACATTTTGCAGAAATGGCCGTGGATGCTGTTTTCAGGCTAAAG GGAAGCACAAACTTGGAAGCTATTCAGATCATCAAAAAACCTGGAGGGTCT
genomic: ACAAGGAACATTTTGCAGAAATGGCCGTGGATGCTGTTTTCAGGCTAAAGgttccatttc ... cgttcaacagGGAAGCACAAACTTGGAAGCTATTCAGATCATCAAAAAACCTGGAGGGTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTGTTGAAGATTGCGATGACTACTTTATGTTCCAAAATTCTCTCACAGGACAAGGAACATTTTGCAGAAATGGCCGTGGATGCTGTTTTCAGGCTAAAGgttccatttcttcctccttttgaaactgattcagcaatgtcatgtgttccttccttctttttctcttgatttatgtgttatctcatgaaagaagatcttc
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcttcctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaactga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tccttcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttctctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaagaag