1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTTTTGATGGCTACAAATCGTATTGATATTCTGGATCAAGCTCTTCTCAGGCCTGGAAGAATTGATAGGAAAATTGAATTTCCTAATCCTAATGAAGAGgtaatacttgtgctctgagaaaatgatattgactgttgtttttggtgatatgaatacattattcgtcaaagtaggcaccttatttagtatttagactatcatttgcagcataaaaaacttttctttatctccatactcattttactcaagtgaggcaggacggtttggctaatgtatgtttccaaaatgtgttgcag
species | Arabidopsis thaliana |
transcript | AT5G19990.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GGCCTGGAAGAATTGATAGGAAAATTGAATTTCCTAATCCTAATGAAGAG TCACGTTTTGACATCTTGAAGATTCACTCGAGGAAAATGAATTTGATGCGTEST: gi|86075404|gb|DR371161.1|DR371161
genomic: GGCCTGGAAGAATTGATAGGAAAATTGAATTTCCTAATCCTAATGAAGAGgtaatacttg ... tgtgttgcagTCACGTTTTGACATCTTGAAGATTCACTCGAGGAAAATGAATTTGATGCGT
EST: GGCCTGGAAGAATTGATAGGAAAATTGAATTTCCTAATCCTAATGAAGAG TCACGTTTTGACATCTTGAAGATTCACTCGAGGAAAATGAATTTGATGCGTEST: gi|124778570|gb|EH868513.1|EH868513
genomic: GGCCTGGAAGAATTGATAGGAAAATTGAATTTCCTAATCCTAATGAAGAGgtaatacttg ... tgtgttgcagTCACGTTTTGACATCTTGAAGATTCACTCGAGGAAAATGAATTTGATGCGT
EST: CCTGGAAGAATTGATAGGAAAATTGAATTTCCTAATCCTAATGAAGAG TCACGTTTTGACATCTTGAAGATTCACTCGAGGAAAATGAATTTGATGCEST: gi|124770410|gb|EH860540.1|EH860540
genomic: CCTGGAAGAATTGATAGGAAAATTGAATTTCCTAATCCTAATGAAGAGgtaatacttg ... tgtgttgcagTCACGTTTTGACATCTTGAAGATTCACTCGAGGAAAATGAATTTGATGC
EST: ATTGAATTTCCTAATCCTAATGAAGAG TCACGTTTTGACATCTTGAAGATTCACTCGAGGAAAATGAATTTGATGCGT
genomic: ATTGAATTTCCTAATCCTAATGAAGAGgtaatacttg ... tgtgttgcagTCACGTTTTGACATCTTGAAGATTCACTCGAGGAAAATGAATTTGATGCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTTGATGGCTACAAATCGTATTGATATTCTGGATCAAGCTCTTCTCAGGCCTGGAAGAATTGATAGGAAAATTGAATTTCCTAATCCTAATGAAGAGgtaatacttgtgctctgagaaaatgatattgactgttgtttttggtgatatgaatacattattcgtcaaagtaggcaccttatttagtatttagactatcatttgcagcataaaaaacttttctttatctccatactcattttactcaagtgaggcaggacggtttggctaatgtatgtttccaaaatgtgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA