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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGTCTCCAAACATGGTAGCCTGCATTGCAGTTGAGTCCATATCTATTCTTGAGAAACTTCATATGAAAGGgttagttactatattttttcgtaacttctttgcaaatagtttcattcatttcgctttaactaattacaatgtattatctttcactgtactgattgtcatgctatgttccatccccatatcaaactag

Basic information

species Arabidopsis thaliana
transcript AT5G18190.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G18190.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA16G04580.1 (Glycine max), 5'ss of exon 7
GATGTCTCCAAACATGGTAGCCTGCATTGCAGTTGAGTCCATATCTATTCTTGAGAAACTTCATATGAAAGGgttagttactatattttttcgtaacttctttgcaaatagtttcattcatttcgctttaactaattacaatgtattatctttcactgtactgattgtcatgctatgttccatccccatatcaaactag
 ||||| ||||| ||||| || ||||||||||| ||| | ||||| ||||||||||| || ||  ||||||||| |     | |         ||  || ||    |||  | |||  | |||  | ||| | | |||   ||   |   | | |||| ||| ||| | ||   |||   | ||     ||  || |||
AATGTCACCAAATATGGTTGCGTGCATTGCAGTAGAGGCAATATCAATTCTTGAGAAGCTCCACTTGAAAGGgtaaacccttgtg-------atagttttttc---aatcctgtcaacc-tttaacatta-ccatttattttggcatggttgtgactg-actaatttttat-taatgaaac-tcgtatcattgaattag

upper sequence: AT5G18190.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv08s0007g07420.t01 (Vitis vinifera), 5'ss of exon 7
GATGTCTCCAAACATGGTAGCCTGCATTGCAGTTGAGTCCATATCTATTCTTGAGAAACTTCATATGAAAGGgttagttactat--attttttcgtaacttctttgcaaatagtttcattcatttcgctttaactaattacaatgtattatctt--tcactgtactgattgtcatgctatgttccatccccatatcaaactag
|||||| ||||| ||||| || ||||||||||| ||| | ||||| ||||| ||||| ||||| ||||| |||| ||| |||||  ||  || | |   |   || |  | | |  ||| |  |     || |  | || |     | |  |||  ||| | |  | ||| |  |  | | ||   | ||   | |||     
GATGTCACCAAATATGGTGGCTTGCATTGCAGTAGAGGCAATATCAATTCTCGAGAAGCTTCACATGAAGGGgtgagt-actattaataattccatgtttcactttctcagaat--catcctgtctctcttgagcactttcctcaaagtggcttcttcattctgttaattattgtcatcttttttcttcctcaaccaag----