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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTAAAGAGCATTCTCTTTCTCATGCCGTGCCATTCTACTCCCTATTATTCCACTCTCCATCGTAACATTCCAATGCAATTTCTCGACTGCACTCCAAGgtaaaggatcacaccccgagtcacagctcttgcttctatgtgattcttaatgattcttcttcttcttctgaaacag

Basic information

species Arabidopsis thaliana
transcript AT5G14850.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G14850.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA17G07620.1 (Glycine max), 5'ss of exon 11
GAGTAAAGAGCATTCTCTTTCTCATGCCGTGCCATTCTACTCCCTATTATTCCACTCTCCATCGTAACATTCCAATGCAATTTCTCGACTGCACTCCAAGgtaaaggatcacaccccgagtcacagctctt-----gcttctatgt----gattcttaatgattcttcttcttcttctgaaacag---------------
 ||| || ||||| || || || ||||| |||||| | |||||||| |||||||  || |||| |||| | |||||||||||||| ||||||||||||||||   |  |          |  | | || ||     || | |   |     ||| | | |||      |  ||  || || |                  
AAGTGAAAAGCATCCTATTCCTAATGCCTTGCCATGCCACTCCCTACTATTCCATGCTGCATCATAACCTGCCAATGCAATTTCTGGACTGCACTCCAAGgtttggattttagaattctgcaataacttttagagtgcgtttggatagagaattttaactgagaaaagtaatttatcagagaatttgaatttctgtaatt

upper sequence: AT5G14850.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA13G01500.1 (Glycine max), 5'ss of exon 7
GAGTAAAGAGCATTCTCTTTCTCATGCCGTGCCATTCTACTCCCTATTATTCCACTCTCCATCGTAACATTCCAATGCAATTTCTCGACTGCACTCCAAGgtaaaggatcacaccccgagtcacagctcttgcttctatgtgattcttaatgattcttcttcttcttctgaaacag-------------
 ||| || |||||||| || || | ||| |||||| | |||||||| ||||| |  || |||| |||| | ||||||||||||||||| ||||| |||||||   |  |          |  | | ||  |     ||   |   |||||  |   |  |  ||| | | ||                 
AAGTGAAAAGCATTCTATTCCTAACGCCTTGCCATGCCACTCCCTACTATTCGATGCTGCATCATAACCTGCCAATGCAATTTCTCGATTGCACACCAAGgtttggattttagaaatctgcaataacttctaaacttaatcggaacttaaataagttcataattcatgttaatgtatcatgttcaacag