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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTGGGCCACAACCAAATGCGAAATTGCTTCTGAACTATGGATTTGTTGATGAGGATAACCCTTATGATAGAGTAATAGTTGAGgtaattacaaaactttgttgcgttactgtaaacactagtgtagtgttcatgtaattcctcactgtttgcatgttttatgcgtcatacacattcaag

Basic information

species Arabidopsis thaliana
transcript AT5G14260.2
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125040608|gb|EL112877.1|EL112877
EST:     TAATAGTTGAG                         GCAGCGTTGAACACTGAGGATCCTCAATACCAGGACAAGAGAATGGTTGCT
genomic: TAATAGTTGAGgtaattacaa ... cacattcaagGCAGCGTTGAACACTGAGGATCCTCAATACCAGGACAAGAGAATGGTTGCT
EST: gi|125023359|gb|EL095628.1|EL095628
EST:     CTATGGATTTGTTGATGAGGATAACCCTTATGATAGAGTAATAGTTGAAG                         GCAGCGTTGAACACTGAGGATCCTC
genomic: CTATGGATTTGTTGATGAGGATAACCCTTATGATAGAGTAATAGTTGA-Ggtaattacaa ... cacattcaagGCAGCGTTGAACACTGAGGATCCTC
EST: gi|125261935|gb|EL276020.1|EL276020
EST:     TGATGAGGATAACCCTTATGATAGAGTAATAGTTGAG                         GCAGCGTTGAACACTGAGGAATCCTCAATA
genomic: TGATGAGGATAACCCTTATGATAGAGTAATAGTTGAGgtaattacaa ... cacattcaagGCAGCGTTGAACACTGAGGA-TCCTCAATA
EST: gi|125257128|gb|EL271213.1|EL271213
EST:     CTATGGATTTGTTGATGAGGATAACCCTTATGATAGAGTAATAGTTGAG                         GCAGCGTTGAACACTGAGGATCCTCAATACCAGGACAAGAGAATGGTTG
genomic: CTATGGATTTGTTGATGAGGATAACCCTTATGATAGAGTAATAGTTGAGgtaattacaa ... cacattcaagGCAGCGTTGAACACTGAGGATCCTCAATACCAGGACAAGAGAATGGTTG
EST: gi|124746763|gb|EH837065.1|EH837065
EST:     TGGATTTGTTGATGAGGATAACCCTTATGATAGAGTAATAGTTGAG                         GCAGCGTTGAACACTGAGGATCCTCAATACCAGGACAAGAGAATGGTTGCT
genomic: TGGATTTGTTGATGAGGATAACCCTTATGATAGAGTAATAGTTGAGgtaattacaa ... cacattcaagGCAGCGTTGAACACTGAGGATCCTCAATACCAGGACAAGAGAATGGTTGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGTGGGCCACAACCAAATGCGAAATTGCTTCTGAACTATGGATTTGTTGATGAGGATAACCCTTATGATAGAGTAATAGTTGAGgtaattacaaaactttgttgcgttactgtaaacactagtgtagtgttcatgtaattcctcactgtttgcatgttttatgcgtcatacacattcaag

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