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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTCCGTGGGATTTGTCTACCAAGGGGAAGTTTATCATTCATTACACTTATGGATGCGACTACAACATGAAGgtgattttctgtttgacacgattgtttaattttaatttttggctgataaattaggaacagatttcacatcttgtggtcatttgtttttacttaaggtcattaggttctctttttagtcactactaagttttgctgactgttaaatacag

Basic information

species Arabidopsis thaliana
transcript AT5G13500.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G13500.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA15G37490.3 (Glycine max), 5'ss of exon 7
CCTCCGTGGGATTTGTCTACCAAGGGGAAGTTTATCATTCATTACACTTATGGATGCGACTACAACATGAAGgtgat-tttctgtttgacacga-ttgtttaattttaatttttggctgataaattaggaacagatttcacatcttgtggtcatttgtttttacttaaggtcattaggttctctttttagtcactactaagttttgctgactgttaaatacag
|| || |||||| |    || ||   |||||  ||  | ||||||||||||||||| |||||||| ||||||||||  | | | |||| |  || |||  || || |  | ||    | ||   |||  ||    || ||    | |||  ||  | | |  ||||  |     ||                                               
CCCCCATGGGATCTTGAAACTAACAAGAAGTACATTCTCCATTACACTTATGGATGTGACTACAATATGAAGgtgaagtatttctttgccttgaattgcatagttattgtcttcaaat-attccttataaat---ttgcattcttggtgaacacatctctgaacttgtgaaatcta-----------------------------------------------

upper sequence: AT5G13500.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv13s0084g00830.t01 (Vitis vinifera), 5'ss of exon 6
CCTCCGTGGGATTTGTCTACCAAGGGGAAGTTTATCATTCATTACACTTATGGATGCGACTACAACATGAAGgtga--ttttctgtttgacacgattgtttaattttaatttttggctgataaattaggaacagatttcacatcttgtggtcatttgtttttacttaaggtcattaggttctctttttagtcactactaagttttgctgactgttaaatacag
|| || ||||||||    ||      ||||||||| ||||| |||||||||||||| ||||||||| | ||||| |  |    | ||  |  | |||   | || ||| |     ||| |||    |   ||| | |    ||||  |  | ||||||| ||  |   | |  ||                                                
CCACCATGGGATTTAGAAACTGCAAAGAAGTTTATTATTCACTACACTTATGGATGTGACTACAACTTAAAGgtaaagtaccttcttccatcccatttcctcatatta-tgagaagctcatag-ccaactaca-actgtgtatctcatc-ttatttgttgttcttctcgattcttc-----------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124713202|gb|EH804604.1|EH804604
EST:     ACTACAACATGAAG                         GGGGAGCTGACATATGGCAAAATAGGAGAGTGGCGATTCGATAAGAGATCA
genomic: ACTACAACATGAAGgtgattttct ... ttaaatacagGGGGAGCTGACATATGGCAAAATAGGAGAGTGGCGATTCGATAAGAGATCA
EST: gi|86075298|gb|DR371055.1|DR371055
EST:     AGGGGAAGTTTATCATTCATTACACTTATGGATGCGACTACAACATGAAG                         GGGGAGCTGACATATGGCAAAATAGGAGAGTGGCGATTCGATAAGAGATCA
genomic: AGGGGAAGTTTATCATTCATTACACTTATGGATGCGACTACAACATGAAGgtgattttct ... ttaaatacagGGGGAGCTGACATATGGCAAAATAGGAGAGTGGCGATTCGATAAGAGATCA