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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAGATCCAAAGAGAATGGCGACTACGTTGCAAACTGAAAACGAGGAATCATGTACTACTTATAACATGCTCAAGgtaggatttcaaacttccccacacccccacccccctcttttcatttgctcaacgtaacatattgacacttgtacaatttcag

Basic information

species Arabidopsis thaliana
transcript AT5G12960.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G12960.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: EFJ08149 (Selaginella moellendorffii), 5'ss of exon 7
GCAAGATCCAAAGAGAATGGCGACTACGTTGCAAACTGAAAACGAGGAATCATGTACTACTTATAACATGCTCAAGgtaggatttcaaacttccccacacccccacccccctcttttcatttgctcaacgtaacatattgacacttgtacaatttcag
|   ||||| |  ||| | |    |||  ||  ||| |||||||||||||| ||||| ||||| ||||||||||||||     ||   |  ||               | || ||||  |||    | ||| ||||  ||    ||  ||   || ||
GTCCGATCCGAGTAGACTTGGAGATACTCTGGGAACCGAAAACGAGGAATCTTGTACAACTTACAACATGCTCAAGgtttctattaggaagtcttt-----------tctcttttttagttt---tatcgttacatgctg----tttgactgctttag

upper sequence: AT5G12960.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: EFJ24537 (Selaginella moellendorffii), 5'ss of exon 7
GCAAGATCCAAAGAGAATGGCGACTACGTTGCAAACTGAAAACGAGGAATCATGTACTACTTATAACATGCTCAAGgtaggatttcaaacttccccacacccccacccccctcttttcatttgctcaacgtaacatattgacacttgtacaatttcag
|    ||||||| ||| | |     ||  ||  ||| |||||||| ||||| ||||| ||||| ||||||||||||||     ||   |  ||    | |       |   | |  |||  ||||     |      ||                   
GTCCAATCCAAATAGACTTGGAGACACTCTGGGAACCGAAAACGAAGAATCTTGTACAACTTACAACATGCTCAAGgtttccattaggaagtcttttctcttttttacttttatcctcacatgct--gtttgctgctttag-----------------