Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAGATCCCAAGAGAATGGCGACTGCACTGCAAACTGAAAACGAGGAATCATGTACTACTTATAACATGCTCAAGgtaggattttaaacttttccccctctttctatttgctcaaggtaacatactaacatatcaacacttgtacaatttcag

Basic information

species Arabidopsis thaliana
transcript AT5G12950.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G12950.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: EFJ08149 (Selaginella moellendorffii), 5'ss of exon 7
GCAAGATCCCAAGAGAATGGCGACTGCACTGCAAACTGAAAACGAGGAATCATGTACTACTTATAACATGCTCAAGgtagg-attttaaacttttccccctctttctatttgctcaaggtaacatactaacatatcaacacttgtacaatttcag
|   ||||| |  ||| | |    | | |||  ||| |||||||||||||| ||||| ||||| ||||||||||||||    |||   || | ||  | || |||   |||  ||   || |||| ||    |  |  |  | |           
GTCCGATCCGAGTAGACTTGGAGATACTCTGGGAACCGAAAACGAGGAATCTTGTACAACTTACAACATGCTCAAGgtttctattaggaagtcttttctcttttttagttttatc---gttacatgctgtt-tgactgctttag-----------

upper sequence: AT5G12950.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: EFJ24537 (Selaginella moellendorffii), 5'ss of exon 7
GCAAGATCCCAAGAGAATGGCGACTGCACTGCAAACTGAAAACGAGGAATCATGTACTACTTATAACATGCTCAAGgtaggattttaaacttttccccctctttctatttgctcaaggtaacatactaacatatcaacacttgtacaatttcag
|    |||| || ||| | |      | |||  ||| |||||||| ||||| ||||| ||||| ||||||||||||||     ||   |  | |   |   ||| || ||  | |   | |||| ||    |  |  |  | |           
GTCCAATCCAAATAGACTTGGAGACACTCTGGGAACCGAAAACGAAGAATCTTGTACAACTTACAACATGCTCAAGgtttccattaggaagtcttttctcttttttactt--ttatcctcacatgctgt--ttgctgctttag-----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86063712|gb|DR359469.1|DR359469
EST:     AAACTGAAAACGAGGAATCATGTACTACTTATAACATGCTCAAG                         GTCTCTAGGAATCTGTTCAGATGGACAAAAGAGGTTAGCTATGCAGACTAT
genomic: AAACTGAAAACGAGGAATCATGTACTACTTATAACATGCTCAAGgtaggatttt ... acaatttcagGTCTCTAGGAATCTGTTCAGATGGACAAAAGAGGTTAGCTATGCAGACTAT
EST: gi|86063711|gb|DR359468.1|DR359468
EST:     AAACTGAAAACGAGGAATCATGTACTACTTATAACATGCTCAAG                         GTCTCTAGGAATCTGTTCAGATGGACAAAAGAGGTTAGCTATGCAGACTAT
genomic: AAACTGAAAACGAGGAATCATGTACTACTTATAACATGCTCAAGgtaggatttt ... acaatttcagGTCTCTAGGAATCTGTTCAGATGGACAAAAGAGGTTAGCTATGCAGACTAT
EST: gi|125017776|gb|EL090045.1|EL090045
EST:     CACTGCAAACTGAAAACGAGGAATCATGTACTACTTATAACATGCTCAAG                         GTCTCTAGGAATCTGTTCAGATGGACAAAAGAGGTTAGCTATG
genomic: CACTGCAAACTGAAAACGAGGAATCATGTACTACTTATAACATGCTCAAGgtaggatttt ... acaatttcagGTCTCTAGGAATCTGTTCAGATGGACAAAAGAGGTTAGCTATG