Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACAGAAGGTTATTGGAGAGCCTGTTGTGTCTGGATTAATCCTTGATGATCATTGGCTTTGGGATCCTGACTTCACAATTGCGTCCAAgtaataaatccttcagttctgttaatcaaatgattcccatttattctttcagattttcaaagtttttctcaatatttcag

Basic information

species Arabidopsis thaliana
transcript AT5G12200.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G12200.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G020002_T03 (Zea mays), 5'ss of exon 7
GACAGAAGGTTATTGGAGAGCCTGTTGTGTCTGGATTAATCCTTGATGATCATTGGCTTTGGGATCCTGACTTCACAATTGCGTCCAAgtaataaatccttcagttctgttaatcaaatgattcccatttattctttcagattttcaaagtttttctcaatatttcag-
| ||||  || || || || ||||| || |||||| || | |||||||||  |||||||||||||||||||||||| ||||| || ||||||         ||  || ||  |  ||    || | | ||||      | ||| |     |||  | | ||  |||   
GGCAGAGAGTCATCGGTGAACCTGTGGTTTCTGGACTAGTGCTTGATGATTCTTGGCTTTGGGATCCTGACTTCACGATTGCTTCAAAgtaaatgggaaaacaactcagt--agtaatgcttttcgaattat------aaattatttctatttcacacgatgcttctag

upper sequence: AT5G12200.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv06s0009g02790.t01 (Vitis vinifera), 5'ss of exon 7
GACAGAAGGTTATTGGAGAGCCTGTTGTGTCTGGATTAATCCTTGATGATCATTGGCTTTGGGATCCTGACTTCACAATTGCGTCCAAgtaata------aatccttcagttctgttaatcaaatga-ttcccatt-tattctttcagattt-tcaaagtt----tttctcaatatttcag
|||||| ||||||||||||||| || || ||||| ||| |||||||||||  | |||| ||||||||||||||||  |  ||  | ||| || |      | ||||||  || | ||  ||   | | || | ||   ||| ||| |  ||| ||||  ||    | | |  || ||||||
GACAGAGGGTTATTGGAGAGCCAGTAGTTTCTGGGTTAGTCCTTGATGATTCTGGGCTCTGGGATCCTGACTTCATCAACGCAGCAAAgcaagatctcatactccttccattttcttcttctcttcactttctatcacattttttaacctttgtcaacattatgatcttttcatgtttcag