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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAACCCTACTGGTGTTGATCCAACCATTCAACAATGGGAGCAAATCAGGAAGTTGATGCGATCAAAGGGATTGATGCCCTTCTTCGATAGTGCTTATCAGgtacacctgatgaatccttttgtgtaagatcagctgatatttaaaccattttccttctgaatcaatggttaatacttgtctctctttttgtatcgcag

Basic information

species Arabidopsis thaliana
transcript AT5G11520.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G11520.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os01g55540.1 (Oryza sativa), 5'ss of exon 7
TAACCCTACTGGTGTTGATCCAACCATTCAACAATGGGAGCAAATCAGGAAGTTGATGCGATCAAAGGGATTGATGCCCTTCTTCGATAGTGCTTATCAGgtacacctgatgaatccttttgtgtaagatcagctgatatttaaaccattttccttctgaatcaatggttaatacttgtctctctttt-tgtatcgcag-----
 ||||||||||| || || |||||  |  | || ||||| || |||||| |||||||| ||||||| | |||| |||| ||||| ||||| |||||||||||| |  |  ||    | ||  |       |  ||  |  |||       |  | |  |  | |||  ||| ||||| |   |||| |   ||   |       
CAACCCTACTGGAGTAGACCCAACTTTGGACCAGTGGGAACAGATCAGGCAGTTGATGAGATCAAAAGCATTGCTGCCATTCTTTGATAGCGCTTATCAGgtaaat-tattggcatccttaatacttatacttctagttcttaggaagcatgacattgg--ttaatactta-tacttctagttcttatacttaatacttatact
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124821677|gb|EH906543.1|EH906543
EST:     AGTTGATGCGATCAAAGGGATTGATGCCCTTCTTCGATAGTGCTTATCAG                         GGCTTTGCAAGTGGAAGTCTTGATACAGATGCGAAA
genomic: AGTTGATGCGATCAAAGGGATTGATGCCCTTCTTCGATAGTGCTTATCAGgtacacctga ... tgtatcgcagGGCTTTGCAAGTGGAAGTCTTGATACAGATGCGAAA
EST: gi|301502657|gb|HO208197.1|HO208197
EST:     AGTTGATGCGATCAAAGGGATTGATGCCCTTCTTCGATAGTGCTTATCAG                         GGCTTTGCAAGTGGAAGTCTTGATACAGATGCGAAACCTATTAGGATGTTT
genomic: AGTTGATGCGATCAAAGGGATTGATGCCCTTCTTCGATAGTGCTTATCAGgtacacctga ... tgtatcgcagGGCTTTGCAAGTGGAAGTCTTGATACAGATGCGAAACCTATTAGGATGTTT
EST: gi|125190783|gb|EL205737.1|EL205737
EST:     CGATCAAAGGGATTGATGCCCTTCTTCGATAGTGCTTATCAG                         GGCTTTGCAAGTGGAAGTCTTGATACAGATGCGAAACCTATTAGGATGTTT
genomic: CGATCAAAGGGATTGATGCCCTTCTTCGATAGTGCTTATCAGgtacacctga ... tgtatcgcagGGCTTTGCAAGTGGAAGTCTTGATACAGATGCGAAACCTATTAGGATGTTT
EST: gi|301502679|gb|HO208219.1|HO208219
EST:     AGTTGATGCGATCAAAGGGATTGATGCCCTTCTTCGATAGTGCTTATCAG                         GGCTTTGCAAGTGGAAGTCTTGATACAGATGCGAAACCTATTAGGATGTTT
genomic: AGTTGATGCGATCAAAGGGATTGATGCCCTTCTTCGATAGTGCTTATCAGgtacacctga ... tgtatcgcagGGCTTTGCAAGTGGAAGTCTTGATACAGATGCGAAACCTATTAGGATGTTT