Sequence
atgc intronic sequence ATGC exonic sequenceTACCATGGTTAGTAGCAGCTAATCCAGTAAATTATGGAAGACCATGTGAGTTATCATGTGTGGAGGCTTTATCTGCCGCTTTAATACTATGgtgagtccataacatcttctcctaaaacccatccgtctcttctattcgtcatacattatccggttttctaatgtcttactctatctgttttccaatcag
Basic information
species | Arabidopsis thaliana |
transcript | AT5G10070.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT5G10070.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G114758_T01 (Zea mays), 5'ss of exon 7
TACCATGGTTAGTAGCAGCTAATCCAGTAAATTATGGAAGACCATGTGAGTTATCATGTGTGGAGGCTTTATCTGCCGCTTTAATACTATGgtgagtccataacatcttctcctaaaacccatccgtctcttctattcgtc--atacattatccggttttctaatgtcttact-ctatctgttttccaatcag----------------
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TACCATGGTTGGTAGCAGCAAATCCTGTGAACTATGGCCGCCCATGTGAACTGTCATGTGTGGAAGCTTTATCAGCAGCCCTCATAATATGgtaatttttaagcatttcttaacgatattgtttggaatatgaagctcatataatcctttagcttgatttataattagatacttccaggcatcagcttattttgtgtacatatttgcag
upper sequence: AT5G10070.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA08G14780.1 (Glycine max), 5'ss of exon 7
TACCATGGTTAGTAGCAGCTAATCCAGTAAATTATGGAAGACCATGTGAGTTATCATGTGTGGAGGCTTTATCTGCCGCTTTAATACTATGgtgagtccataacatcttctcctaaaacccatccgtctcttctattcgtcatacattatccggttttctaatgtcttactctatctgttttccaatcag--
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TGCCATGGCTTGTAGCAGCAAATCCAGTAAATTATGGTCGGCCATGTCAGCTATCTTGTGTAGAGGCTTTATCTGCTGCTTTGACAATATGgtaccgaaatggccttatctgcagctactgactagatgatatctttttcctttctttggtgtgttctataatttattcaacc-cctcctccccgcccaaaa
upper sequence: AT5G10070.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA05G31550.1 (Glycine max), 5'ss of exon 7
TACCATGGTTAGTAGCAGCTAATCCAGTAAATTATGGAAGACCATGTGAGTTATCATGTGTGGAGGCTTTATCTGCCGCTTTAATACTATGgtgagtccataacatcttctcctaaaacccatccgtctcttctattcgtcatacattatccggttttctaatgtcttactctatctgttttccaatcag---
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TGCCATGGCTTGTAGCAGCAAATCCAGTAAATTATGGTCGGCCATGTCAGCTATCTTGTGTAGAGGCTTTATCTGCTGCTTTGACAATATGgtacaaa-atggccttatctgcagctactgactagatgatatcttttttctttctttggtgtgttctataatttatt-caccccctcctccctgcccaaaaa
upper sequence: AT5G10070.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv07s0031g01200.t01 (Vitis vinifera), 5'ss of exon 7
TACCATGGTTAGTAGCAGCTAATCCAGTAAATTATGGAAGACCATGTGAGTTATCATGTGTGGAGGCTTTATCTGCCGCTTTAATACTATGgt----gagtccataacatcttctcctaaaacccatccgtctcttctattcgtcatacattatccggttttctaatgtcttactctatctgttttccaatcag
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TACCATGGCTGGTGGCAGCAAACCCAGTAAATTATGGTCGACCATGTGAGCTCTCTTGTGTGGAAGCATTATCTGCAGCTTTATTTATATGgtaccagtattcttgacttttcatgtttcatctattcgaatgcttatgctattcct--attagatggtttgtgatcattgtaatcactatcttgcatagtgc-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19874774|gb|AU235605.1|AU235605EST: CCATGTGAGTTATCATGTGTGGAGGCTTTATCTGCCGCTTTA-TACTATG TGGGGAGAAGGAAACTGCANAACTTTTGTTAGGAAAATTCAANGGGGGTCA
genomic: CCATGTGAGTTATCATGTGTGGAGGCTTTATCTGCCGCTTTAATACTATGgtgagtccat ... ttccaatcagTGGGGAGAAGGAAACTGCAGAACTTTTGTTAGGAAAATTCAAATGGGGTCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TACCATGGTTAGTAGCAGCTAATCCAGTAAATTATGGAAGACCATGTGAGTTATCATGTGTGGAGGCTTTATCTGCCGCTTTAATACTATGgtgagtccataacatcttctcctaaaacccatccgtctcttctattcgtcatacattatccggttttctaatgtcttactctatctgttttccaatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG