Sequence
atgc intronic sequence ATGC exonic sequenceGTACTATTCTCATAACAATGAGTACATTGAAATCTGCCGTAGCTACAAGGCGATATATGATATCCCTTCAGTAAAAGAAACTCCGGAGCAGTGGATTCCGgtaagctcatgccgttgattggatgtatagttagtatacattctatagggttagtgtaataactttctttgatcttcaaaacattag
Basic information
species | Arabidopsis thaliana |
transcript | AT5G09900.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT5G09900.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os03g63430.2 (Oryza sativa), 5'ss of exon 7
GTACTATTCTCATAACAATGAGTACATTGAAATCTGCCGTAGCTACAAGGCGATATATGATATCCCTTCAGTAAAAGAAACTCCGGAGCAGTGGATTCCGgtaagctcatgccgttgattggatgta--tagt-tagtatacattctatagggttagtgtaataact-ttctttgatcttcaaaa----cattag
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CTATTACTCGCACAACAATGATTACCTGGAAATCTGCCGTTGCTACAAGTCGATTTATGAAATTCCATCAATAAAAGAGGATCCATCAAAGTGGATACCGgtaaagctctctcattcgcaagtcttacttggtgtggtgtgtgcgcatactcactcacgctataatggttatctgactgcctgaattcgctttag
upper sequence: AT5G09900.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA05G32030.2 (Glycine max), 5'ss of exon 7
GTACTATTCTCATAACAATGAGTACATTGAAATCTGCCGTAGCTACAAGGCGATATATGATATCCCTTCAGTAAAAGAAACTCCGGAGCAGTGGATTCCGgtaagc-------tcatgccgttgattggatgtatagttagtatacattctatagggttagtgtaataactttctttgatcttcaaaacattag
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GTATTATTCCCATAACAATGATTATCTTGAAATTTGCCGTTGCTACAAGGCAATATATGAGATTCCATCTGTCAAAGAAGACCCTGCCAAGTGGATTCCAgtaagccttctcttttttctgttattgtgagattctgttgttatgcgat--attctgtttttctgaatattatcttttatgtgtag--------
upper sequence: AT5G09900.2 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv07s0031g01970.t01 (Vitis vinifera), 5'ss of exon 7
GTACTATTCTCATAACAATGAGTACATTGAAATCTGCCGTAGCTACAAGGCGATATATGATATCCCTTCAGTAAAAGAAACTCCGGAGCAGTGGATTCCGgtaagctcatgccgttgattggatgtatagttagtatacattctatagggttagtgtaataactttctttgatcttcaaaacattag
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GTATCACTCCCACAGCAATGATTACCTTGAAATTTGTCGTAGCTATAAGGCGATATATGAAATCCCATCTGTCAGAGAAGATCCAGCTCAGTGGATACCGgtaaa--gaatcttttccatgtatgcctttgcccttttgtttttttggagcaactctaacaatctgcatgtag--------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125291731|gb|EL305816.1|EL305816EST: CAGTAAAAGAAACTCCGGAGCAGTGGATTCCG GTCCTGAGGAAGATCTGCTGGTTCTTGGTCTTGGCACCTCA
genomic: CAGTAAAAGAAACTCCGGAGCAGTGGATTCCGgtaagctcat ... aaaacattagGTCCTGAGGAAGATCTGCTGGTTCTTGGTCTTGGCACCTCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTACTATTCTCATAACAATGAGTACATTGAAATCTGCCGTAGCTACAAGGCGATATATGATATCCCTTCAGTAAAAGAAACTCCGGAGCAGTGGATTCCGgtaagctcatgccgttgattggatgtatagttagtatacattctatagggttagtgtaataactttctttgatcttcaaaacattag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA