Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTTTGCACGTTTGAGTGCTGTGTACGGTGGGACTTACATGCTCAACAAGCCCGAATGCAAGgttatgaacaacctataatctcttctttctctgtttataaatgatataacttaactcttttaaagatagaaactcatgaaccttcaatatcatccctaacag

Basic information

species Arabidopsis thaliana
transcript AT5G09550.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G09550.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os03g16900.1 (Oryza sativa), 5'ss of exon 8
GCTTTTGCACGTTTGAGTGCTGTGTACGGTGGGACTTACATGCTCAACAAGCCCGAATGCAAGgttat-gaacaacctataatctcttctttctctgtttataaatgatataacttaactcttttaaagatagaaactcatgaaccttcaatatcatccctaacag
|| ||||| |||||||||||||| || ||||| || |||||||| |||||  | ||||||||||| |  |||  |    | |  |  |  ||   |  ||   ||  ||  |  | ||  ||| |||   ||    |    | |                      
GCCTTTGCTCGTTTGAGTGCTGTTTATGGTGGCACATACATGCTAAACAAAGCAGAATGCAAGgtaaccgaagcattgctcagatgctactttggtactttccaactatccagatgaatgcttataattctacggtcgttggcag---------------------

upper sequence: AT5G09550.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G084440_T01 (Zea mays), 5'ss of exon 8
GCTTTTGCACGTTTGAGTGCTGTGTACGGTGGGACTTACATGCTCAACAAGCCCGAATGCAAGgttatgaacaacctataatctcttctttctctgtttataaatgatataactt-------aactcttttaaagatagaaactcatgaaccttcaatatcatccctaacag
|| ||||| ||  |||| ||||| |||||||| || |||||||| |||||||| ||||||||||| || || |||      |  | | |    | | |   | |  | |||  |        | | ||   | | || |     |   ||    |||  || |  ||  |||
GCCTTTGCCCGCCTGAGCGCTGTTTACGGTGGCACGTACATGCTGAACAAGCCAGAATGCAAGgtaat-aataactggagctagcgtttcagacagctagcacacaacatacatgcagagagagcgctcagataaattggtgtaccaaaattcgcaagctctttgctg-cag

upper sequence: AT5G09550.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv00s0313g00050.t01 (Vitis vinifera), 5'ss of exon 8
GCTTTTGCACGTTTGAGTGCTGTGTACGGTGGGACTTACATGCTCAACAAGCCCGAATGCAAGgttatgaacaacctataatct-cttctttctctgtttataaatgatataacttaactcttttaaagatagaaactcatgaaccttcaatatcatccctaacag---
|| ||||| ||| |||||||||| || ||||| || ||||||||||||||||| ||||||||||| ||   | |     ||| | |||    || | ||| |  | || |||  | || | || || |  |    | |      ||||| ||   | || |  |||   
GCATTTGCTCGTCTGAGTGCTGTTTATGGTGGTACCTACATGCTCAACAAGCCAGAATGCAAGgtaatattctaatatcaatgtgcttgaagctttttttcttcaagaaatatgtgaaattttatagatttttccatt-----gccttcgatgg-agccttgccaggaa