Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAATGCACTTTCTGTCTCGAGATCATCGGGATTAAGAAGAATCCTAACGGTCCCATGTATACATCACTCGGTGTGATGACCAGGGGAACAATCATCGAGgttagtccccaagatctttacgtattaagttgtcatttatgctaaagttgcaaataactcaatatgcgaatggatttttcag

Basic information

species Arabidopsis thaliana
transcript AT5G06360.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86081020|gb|DR376777.1|DR376777
EST:     GTCCCATGTATACATCACTCGGTGTGATGACCAGGGGAACAATCATCGAG                         GTCAATGTGAGTGAGCTTGGTCTTGTTACACCAGCTGGAAAGGTTGTCTGG
genomic: GTCCCATGTATACATCACTCGGTGTGATGACCAGGGGAACAATCATCGAGgttagtcccc ... gatttttcagGTCAATGTGAGTGAGCTTGGTCTTGTTACACCAGCTGGAAAGGTTGTCTGG
EST: gi|86050594|gb|DR346349.1|DR346349
EST:     GTCCCATGTATACATCACTCGGTGTGATGACCAGGGGAACAATCATCGAG                         GTCAATGTGAGTGAGCTTGGTCTTGTTACACCAGCTGGAAAGGTTGTCTGG
genomic: GTCCCATGTATACATCACTCGGTGTGATGACCAGGGGAACAATCATCGAGgttagtcccc ... gatttttcagGTCAATGTGAGTGAGCTTGGTCTTGTTACACCAGCTGGAAAGGTTGTCTGG
EST: gi|86050593|gb|DR346348.1|DR346348
EST:     GTCCCATGTATACATCACTCGGTGTGATGACCAGGGGAACAATCATCGAG                         GTCAATGTGAGTGAGCTTGGTCTTGTTACACCAGCTGGAAAGGTTGTCTGG
genomic: GTCCCATGTATACATCACTCGGTGTGATGACCAGGGGAACAATCATCGAGgttagtcccc ... gatttttcagGTCAATGTGAGTGAGCTTGGTCTTGTTACACCAGCTGGAAAGGTTGTCTGG
EST: gi|86072911|gb|DR368668.1|DR368668
EST:     GTCCCATGTATACATCACTCGGTGTGATGACCAGGGGAACAATCATCGAG                         GTCAATGTGAGTGAGCTTGGTCTTGTTACACCAGCTGGAAAGGTTGTCTGG
genomic: GTCCCATGTATACATCACTCGGTGTGATGACCAGGGGAACAATCATCGAGgttagtcccc ... gatttttcagGTCAATGTGAGTGAGCTTGGTCTTGTTACACCAGCTGGAAAGGTTGTCTGG