1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GAAGGGGTTGGATGCACGTCTTCGGGAGATCCGGAGTTATCTTGACCTTGTAATCGAAGGAAAGCTCCCTCTAAACCATGAGATTTTATACCATCTACAGgttagaactatatttccgtttcgtgttctgaattttacaaattatggagaaactatttgacaatgtccaaacctatgtgttttgcgctctttaaaatattctagtcactgtctctgctgttggttgatttcgtctaatgaaatatattctcgtaaaatcgacag
species | Arabidopsis thaliana |
transcript | AT5G05780.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TAATCGAAGGAAAGCTCCCTCTAAACCATGAGATTTTATACCATCTACAG GACGTTTTCAACTTGCTTCCTAACCTGAATGTGAACGAEST: gi|164148049|gb|ES032853.1|ES032853
genomic: TAATCGAAGGAAAGCTCCCTCTAAACCATGAGATTTTATACCATCTACAGgttagaacta ... aaatcgacagGACGTTTTCAACTTGCTTCCTAACCTGAATGTGAACGA
EST: TTTTATACCATCTACAG GACGTTTTCAACTTGCTTCCTAACCTGAATGTGAACGAGTTGGTCAAGGCCEST: gi|124977862|gb|EL051137.1|EL051137
genomic: TTTTATACCATCTACAGgttagaacta ... aaatcgacagGACGTTTTCAACTTGCTTCCTAACCTGAATGTGAACGAGTTGGTCAAGGCC
EST: CCCTCTAAACCATGAGATTTTATACCATCTACAG GACGTTTTCAACTTGCTTCCTAACCTGAATGTGAACGAGTTGGTCAAGGCCEST: gi|124877863|gb|EH957300.1|EH957300
genomic: CCCTCTAAACCATGAGATTTTATACCATCTACAGgttagaacta ... aaatcgacagGACGTTTTCAACTTGCTTCCTAACCTGAATGTGAACGAGTTGGTCAAGGCC
EST: TAATCGAAGGAAAGCTCCCTCTAAACCATGAGATTTTATACCATCTACAG GACGTTTTCAACTTGCTTCCTAACCTGAATGTGAAEST: gi|86079670|gb|DR375427.1|DR375427
genomic: TAATCGAAGGAAAGCTCCCTCTAAACCATGAGATTTTATACCATCTACAGgttagaacta ... aaatcgacagGACGTTTTCAACTTGCTTCCTAACCTGAATGTGAA
EST: TAATCGAAGGAAAGCTCCCTCTAAACCATGAGATTTTATACCATCTACAG GACGTTTTCAACTTGCTTCCTAACCTGAATGTGAACGAGTTGGTCAAGGCCEST: gi|124983346|gb|EL056084.1|EL056084
genomic: TAATCGAAGGAAAGCTCCCTCTAAACCATGAGATTTTATACCATCTACAGgttagaacta ... aaatcgacagGACGTTTTCAACTTGCTTCCTAACCTGAATGTGAACGAGTTGGTCAAGGCC
EST: TAATCGAAGGAAAGCTCCCTCTAAACCANGAGATTTTATACCATCTACAG GACGTTTTCAACTTGCTTCCTAACCTGAATGTGAACGAGTTGGTCAAGGCC
genomic: TAATCGAAGGAAAGCTCCCTCTAAACCATGAGATTTTATACCATCTACAGgttagaacta ... aaatcgacagGACGTTTTCAACTTGCTTCCTAACCTGAATGTGAACGAGTTGGTCAAGGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGGGGTTGGATGCACGTCTTCGGGAGATCCGGAGTTATCTTGACCTTGTAATCGAAGGAAAGCTCCCTCTAAACCATGAGATTTTATACCATCTACAGgttagaactatatttccgtttcgtgttctgaattttacaaattatggagaaactatttgacaatgtccaaacctatgtgttttgcgctctttaaaatattctagtcactgtctctgctgttggttgatttcgtctaatgaaatatattctcgtaaaatcgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA